View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2481_low_2 (Length: 375)
Name: NF2481_low_2
Description: NF2481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2481_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 14 - 352
Target Start/End: Complemental strand, 51406466 - 51406129
Alignment:
| Q |
14 |
caaaggagcaggtgtaccgcaattcttacttcagtgagtgtccaagtcatgtttgcaaggcagggcagtccagatgattagtatgcccgtccgtcgaagt |
113 |
Q |
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| T |
51406466 |
caaaagagcaggtgtaccgcgat-cttacttcagtgagtgtccaagtcatgtttgcaaggcagggcagtccagatgattagtatgcccgtccgtcgaagt |
51406368 |
T |
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| Q |
114 |
ccgtggtggtcatgagcatgtgggcgacgatgctagagtgcaggtttttactctactcatcatagacatgtgtttgcatgcacttaatggatatgagttc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51406367 |
ccgtggtggtcatgagcatgtgggcgacgatgctagagtgcaggtttttactctactcatcatagacatgtgtttgcatgcacttaatggatatgagttc |
51406268 |
T |
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| Q |
214 |
agttgtcaaaatacaaagagtcaacacatcaacctaaatgctagaggttttcaatggatttaaatttcctcattttctccatgtgaaatgataacaacaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51406267 |
agttgtcaaaatacaaagagtcaacacatcaacctatatgctagaggttttcaatggatttaaatttcctcattttctccatgtgaaatgataacaacaa |
51406168 |
T |
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| Q |
314 |
tctctttctctttttgacattttcttcaactctaaagtg |
352 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
51406167 |
tctctttctctttttgacattttcttcaactctaaagtg |
51406129 |
T |
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