View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2481_low_5 (Length: 349)
Name: NF2481_low_5
Description: NF2481
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2481_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 38397610 - 38397276
Alignment:
| Q |
1 |
aagaaaccctagttagactcaaagatgtaaatgagagtgtgtgt--tagcttgtaattggatgaaagaaaaatgagacatgagttaggttgtctgagtgt |
98 |
Q |
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| T |
38397610 |
aagaaaccctagttagactcaaagatgtaaatgagtgtgtgtgtgttagcttgtaattggatgaaagaaaaatgagacatgagttaggttgtctgagtgt |
38397511 |
T |
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| Q |
99 |
ttcaaaagccaaaagcagacacagtacttgctcctaaaacttaacataatttaatgatatgtttgtgttcccaacaccaaattgcactaaaatgaagcct |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38397510 |
ttcaaaagccaaaagcagacacagtacttgctcctaaaacttaacataatttaatgatatgtttgtgttcccaacaccaaattgcactaaaatgaagcct |
38397411 |
T |
|
| Q |
199 |
gaattgctttagggaaaaacttttgaaccagatctgcttgtaacacaaatgaagcaaaaccagaaatttttggattgatgtgttgatagctaaaagaggg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38397410 |
gaattgctttagggaaaaacttttgaaccagatctgcttgtaacacaaatgaagcaaaaccagaaatttttggattgatgtgttgatagctaaaagaggg |
38397311 |
T |
|
| Q |
299 |
aaagaaagtgaaagccaaagggtttggggaaaaac |
333 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
38397310 |
aaagaaagtgaaagccaaagggtttggggaaaaac |
38397276 |
T |
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