View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2482_high_6 (Length: 238)
Name: NF2482_high_6
Description: NF2482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2482_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 20989698 - 20989488
Alignment:
| Q |
18 |
ttatatgaatatgtcatattagttacacttannnnnnnnnnnngtttaccttacaaaatgatatataatagtaaattactttctttctttttccaatgct |
117 |
Q |
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| T |
20989698 |
ttatatgaatatgtcatattagttacacttattttttatttttgtttaccttacaaaatgatatataatagtaaattactttctttctttttccaatgct |
20989599 |
T |
|
| Q |
118 |
tgaacaccaaacagtgagaggattatctttgataatatctaatgtgaagaacaactactttaatctctttaatttgtattcttgtattatactgtattgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20989598 |
tgaacaccaaacagtgagaggattatctttgataatatctaatgtgaagaacaactactttaatctctttaatttgtattcttgtattatactgtattgt |
20989499 |
T |
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| Q |
218 |
attgttctgtg |
228 |
Q |
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|||||| |||| |
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| T |
20989498 |
attgttttgtg |
20989488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 74 - 181
Target Start/End: Complemental strand, 21000717 - 21000610
Alignment:
| Q |
74 |
aatgatatataatagtaaattactttctttctttttccaatgcttgaacaccaaacagtgagaggattatctttgataatatctaatgtgaagaacaact |
173 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21000717 |
aatgatatataatagtaaattactttttttctttttccaatgcttgaacaccaaacagtgagaggattatctttgataatatctaatgtgaagaacaact |
21000618 |
T |
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| Q |
174 |
actttaat |
181 |
Q |
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|||||||| |
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| T |
21000617 |
actttaat |
21000610 |
T |
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