View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2482_low_1 (Length: 748)
Name: NF2482_low_1
Description: NF2482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2482_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 622; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 16 - 734
Target Start/End: Complemental strand, 44851182 - 44850474
Alignment:
| Q |
16 |
gttttttggctgaacagcccttgcatgtgctgcacctataatatcccctgtagatttgtaccaatattaaccaaactgcaataggaagtgctaacacaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
44851182 |
gttttttggctgaacagcccttgcatgtgctgcacctataatatcccctgtagatttgtaccaacattaaccaaactgcaataggaagtgccaacacaaa |
44851083 |
T |
|
| Q |
116 |
caccgggacacaatactaatatcgacaagtctcgacaccaatattaatttgagaaaatgaaatttttgaatataaccacatgtgttggtgtgggaaactg |
215 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44851082 |
caccgggacacaatactaatattgacaagtctcgacaccaatattaatttgagaaaatgaaatttttgaatataaccacatgtgttggtgtgggaaactg |
44850983 |
T |
|
| Q |
216 |
acaccgacacgacgctttcaatatgaagagtagggtgctactgtagcatattcaaatctagatagaattcaacttctgtagccttagagttgagaacttc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44850982 |
acaccgacacgacgctttcaatatgaagagtagggtgctactgtagcatattcaaatctagatagaattcaacttctgtagccttagagttgagaactt- |
44850884 |
T |
|
| Q |
316 |
cacattggcgaagaatccaaat-agttcttaacttacttatcatacccaattaaacccactattttttatcaaaactatttcttgatagaccgtgttata |
414 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
44850883 |
-------------aatccaaattagttcttaacttacttatcatactcaattaaacccactattttttatcaaaaccatttattgatagaccgtgttata |
44850797 |
T |
|
| Q |
415 |
aaagaactattctttcatgtggttcttatacaaaatgtcatataaacttgagttggaaatgttctaattataagaatgctgtcttacatgcaagatctta |
514 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44850796 |
aaagaactattctttcatgtggttcttatataaaatgtcatataaacttgagttggaaatgttctaattataagaatgctgtcttacatgcaagatctta |
44850697 |
T |
|
| Q |
515 |
gaacatctctaaggccaatttctatgagtaattgtccttatatcaagacatggcttcaatttagcatatatattaactgtgtatttgaaacagtttgttt |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44850696 |
gaacatctctaaggccaatttctatgagtaattgtccttatatcaagacatggcttcaatttagcatatatattaactgtgtatttgaaacagtttgttt |
44850597 |
T |
|
| Q |
615 |
tgtatttttctgacccagcttgtattagtattgtgtataagctgaatgaatcagtttgttttgtatt---tgagtcacattaagaaacttctttggattc |
711 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44850596 |
cgtatttttctgacccagcttgtattagtattgtgtataagctgaatgaatcagtttgttttgtatttgatgagtcacattaagaaacttctttggattc |
44850497 |
T |
|
| Q |
712 |
ccttgccacttggaccacaggtt |
734 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
44850496 |
ccttgccacttggaccacaggtt |
44850474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 16464130 - 16464179
Alignment:
| Q |
149 |
gacaccaatattaatttgagaaaatgaaatttttgaatataaccacatgt |
198 |
Q |
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| T |
16464130 |
gacaccaatagtaatttgagaaaatgaaattgttgaatgtaaacacatgt |
16464179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 11781624 - 11781565
Alignment:
| Q |
147 |
tcgacaccaatattaatttgagaaaatgaaatttttgaatataaccacatgtgttggtgt |
206 |
Q |
| |
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||||||||| || ||||||||||||||||||| ||||||| |||| ||||| ||||||| |
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| T |
11781624 |
tcgacaccagtaataatttgagaaaatgaaatatttgaatgtaactacatgctttggtgt |
11781565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 194
Target Start/End: Original strand, 10735215 - 10735261
Alignment:
| Q |
148 |
cgacaccaatattaatttgagaaaatgaaatttttgaatataaccac |
194 |
Q |
| |
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| T |
10735215 |
cgacaccaataataatttgggaaaatgaaatatttgaatacaaccac |
10735261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 205
Target Start/End: Original strand, 39828477 - 39828522
Alignment:
| Q |
160 |
taatttgagaaaatgaaatttttgaatataaccacatgtgttggtg |
205 |
Q |
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| T |
39828477 |
taatttgagaatatgaaataattgaatgtaaccacatgtgttggtg |
39828522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 200
Target Start/End: Complemental strand, 30127719 - 30127682
Alignment:
| Q |
163 |
tttgagaaaatgaaatttttgaatataaccacatgtgt |
200 |
Q |
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||||||||||||||||| |||||| ||||||||||||| |
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| T |
30127719 |
tttgagaaaatgaaattattgaatgtaaccacatgtgt |
30127682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 30243122 - 30243175
Alignment:
| Q |
147 |
tcgacaccaatattaatttgagaaaatgaaatttttgaatataaccacatgtgt |
200 |
Q |
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|||||||| ||| ||||||||| |||||||| |||||||||||||||||||| |
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| T |
30243122 |
tcgacaccgataacaatttgagagaatgaaatagttgaatataaccacatgtgt |
30243175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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