View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2482_low_12 (Length: 211)

Name: NF2482_low_12
Description: NF2482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2482_low_12
NF2482_low_12
[»] chr4 (37 HSPs)
chr4 (1-129)||(39051244-39051372)
chr4 (107-200)||(39051067-39051160)
chr4 (1-155)||(55264546-55264702)
chr4 (1-108)||(49448181-49448290)
chr4 (48-160)||(45921828-45921940)
chr4 (79-162)||(55264399-55264482)
chr4 (87-181)||(13302114-13302213)
chr4 (117-162)||(13302236-13302281)
chr4 (78-159)||(54091019-54091100)
chr4 (79-162)||(13119193-13119276)
chr4 (24-96)||(53924452-53924526)
chr4 (80-150)||(33614379-33614449)
chr4 (85-162)||(5162836-5162913)
chr4 (117-162)||(13432688-13432733)
chr4 (79-160)||(44137393-44137474)
chr4 (78-146)||(7403253-7403321)
chr4 (79-127)||(21782173-21782221)
chr4 (27-160)||(54090899-54091034)
chr4 (79-146)||(13119375-13119442)
chr4 (87-162)||(13432756-13432830)
chr4 (81-160)||(40942585-40942664)
chr4 (66-108)||(49448149-49448191)
chr4 (1-96)||(54458704-54458801)
chr4 (58-159)||(11383005-11383105)
chr4 (79-124)||(39051239-39051284)
chr4 (1-45)||(13119236-13119280)
chr4 (118-162)||(39493626-39493670)
chr4 (79-163)||(40942669-40942753)
chr4 (79-123)||(55264542-55264586)
chr4 (56-144)||(55284022-55284110)
chr4 (78-129)||(7402994-7403045)
chr4 (79-160)||(53924391-53924469)
chr4 (26-93)||(39051167-39051236)
chr4 (1-45)||(13119371-13119415)
chr4 (1-45)||(21782181-21782225)
chr4 (75-127)||(49448246-49448298)
chr4 (84-148)||(51103403-51103467)
[»] chr1 (29 HSPs)
chr1 (43-163)||(38783893-38784013)
chr1 (1-129)||(845023-845153)
chr1 (4-163)||(38576575-38576735)
chr1 (16-148)||(15395358-15395492)
chr1 (49-163)||(7790375-7790488)
chr1 (24-162)||(10595439-10595578)
chr1 (56-161)||(27293283-27293388)
chr1 (78-162)||(6219627-6219711)
chr1 (1-129)||(34835633-34835762)
chr1 (79-162)||(40649779-40649862)
chr1 (88-162)||(46410826-46410900)
chr1 (79-148)||(15395209-15395278)
chr1 (26-123)||(40649847-40649946)
chr1 (78-162)||(10377539-10377623)
chr1 (24-121)||(30570172-30570270)
chr1 (83-146)||(4066923-4066986)
chr1 (91-162)||(28504713-28504784)
chr1 (80-181)||(34835570-34835672)
chr1 (79-161)||(38576698-38576780)
chr1 (58-146)||(23399543-23399634)
chr1 (48-96)||(12951710-12951758)
chr1 (82-146)||(34535330-34535394)
chr1 (45-128)||(28504802-28504891)
chr1 (79-160)||(1818377-1818458)
chr1 (9-103)||(6219678-6219774)
chr1 (87-144)||(46410665-46410722)
chr1 (110-162)||(8792969-8793021)
chr1 (77-113)||(31063373-31063409)
chr1 (1-45)||(46410814-46410857)
[»] chr8 (16 HSPs)
chr8 (1-160)||(29490376-29490537)
chr8 (24-127)||(33229557-33229662)
chr8 (28-162)||(23961584-23961720)
chr8 (55-160)||(10028747-10028852)
chr8 (1-155)||(21136596-21136752)
chr8 (107-162)||(5840355-5840410)
chr8 (80-162)||(10028869-10028951)
chr8 (78-160)||(21136711-21136793)
chr8 (78-180)||(10028629-10028737)
chr8 (79-162)||(5840958-5841041)
chr8 (97-148)||(23768775-23768826)
chr8 (24-99)||(29490540-29490617)
chr8 (79-153)||(5847118-5847192)
chr8 (80-146)||(32029634-32029700)
chr8 (78-148)||(42847830-42847900)
chr8 (55-96)||(41424620-41424661)
[»] chr7 (21 HSPs)
chr7 (1-162)||(12427835-12427998)
chr7 (79-162)||(42709919-42710002)
chr7 (48-160)||(35660930-35661042)
chr7 (78-160)||(41008915-41008997)
chr7 (24-148)||(10524931-10525054)
chr7 (55-129)||(32296396-32296470)
chr7 (91-157)||(41008801-41008867)
chr7 (28-105)||(16953226-16953305)
chr7 (48-163)||(30935208-30935324)
chr7 (120-163)||(16808055-16808098)
chr7 (80-154)||(26752010-26752084)
chr7 (78-163)||(16830293-16830378)
chr7 (93-162)||(22794637-22794706)
chr7 (107-162)||(43669487-43669540)
chr7 (46-85)||(47589490-47589529)
chr7 (78-163)||(10525036-10525115)
chr7 (79-129)||(33384106-33384156)
chr7 (79-148)||(42710135-42710202)
chr7 (117-162)||(16810450-16810495)
chr7 (75-115)||(5964225-5964265)
chr7 (119-163)||(24451952-24451996)
[»] chr2 (21 HSPs)
chr2 (1-160)||(32502816-32502977)
chr2 (5-161)||(22191431-22191590)
chr2 (79-160)||(33940031-33940112)
chr2 (79-156)||(17658784-17658861)
chr2 (79-160)||(32013973-32014053)
chr2 (1-125)||(6511062-6511188)
chr2 (79-160)||(32503040-32503121)
chr2 (72-129)||(39760178-39760235)
chr2 (1-85)||(17658821-17658907)
chr2 (76-162)||(6511019-6511105)
chr2 (5-99)||(32502980-32503076)
chr2 (75-127)||(8033868-8033920)
chr2 (79-163)||(39760375-39760459)
chr2 (79-126)||(22191420-22191467)
chr2 (1-96)||(8033595-8033692)
chr2 (77-123)||(33939958-33940004)
chr2 (77-123)||(39760286-39760332)
chr2 (107-156)||(17672952-17673001)
chr2 (1-42)||(39760188-39760229)
chr2 (98-163)||(44327904-44327969)
chr2 (1-45)||(33940027-33940071)
[»] chr5 (31 HSPs)
chr5 (1-184)||(39643166-39643356)
chr5 (78-162)||(36184729-36184813)
chr5 (26-162)||(33391453-33391591)
chr5 (24-129)||(9900233-9900340)
chr5 (79-148)||(8285232-8285301)
chr5 (79-162)||(31066075-31066159)
chr5 (77-162)||(9637747-9637829)
chr5 (75-162)||(11275660-11275747)
chr5 (5-104)||(31066010-31066112)
chr5 (79-129)||(31065881-31065931)
chr5 (16-99)||(39643078-39643163)
chr5 (79-160)||(5971885-5971966)
chr5 (78-163)||(20399000-20399084)
chr5 (5-162)||(8285028-8285187)
chr5 (81-148)||(8840016-8840083)
chr5 (79-162)||(39643020-39643103)
chr5 (49-127)||(4902222-4902300)
chr5 (79-133)||(9637652-9637706)
chr5 (79-163)||(11243256-11243337)
chr5 (74-127)||(33676577-33676631)
chr5 (9-162)||(11275711-11275865)
chr5 (79-162)||(31051195-31051279)
chr5 (56-104)||(33090674-33090722)
chr5 (79-158)||(36184522-36184601)
chr5 (82-156)||(987300-987373)
chr5 (48-125)||(3620904-3620981)
chr5 (79-162)||(31046134-31046218)
chr5 (24-129)||(5971795-5971902)
chr5 (1-45)||(27354513-27354557)
chr5 (79-163)||(27354517-27354601)
chr5 (79-143)||(31050988-31051052)
[»] chr3 (34 HSPs)
chr3 (48-159)||(29504774-29504885)
chr3 (1-162)||(20124158-20124320)
chr3 (79-163)||(33429113-33429197)
chr3 (78-181)||(40472813-40472916)
chr3 (79-162)||(55447176-55447259)
chr3 (55-129)||(38181385-38181459)
chr3 (81-162)||(39840661-39840742)
chr3 (24-162)||(45965675-45965815)
chr3 (55-158)||(1431440-1431542)
chr3 (24-96)||(20124078-20124152)
chr3 (78-160)||(45965797-45965879)
chr3 (24-129)||(28860558-28860665)
chr3 (79-163)||(48338312-48338396)
chr3 (25-121)||(11413149-11413247)
chr3 (79-162)||(16298194-16298277)
chr3 (79-162)||(33075263-33075346)
chr3 (78-162)||(27812296-27812380)
chr3 (72-160)||(28860494-28860582)
chr3 (78-162)||(49547695-49547779)
chr3 (79-163)||(55446947-55447031)
chr3 (79-162)||(42045773-42045856)
chr3 (79-163)||(39840886-39840970)
chr3 (55-162)||(40472931-40473037)
chr3 (24-96)||(47337242-47337316)
chr3 (79-129)||(1163420-1163470)
chr3 (18-96)||(33429056-33429136)
chr3 (80-134)||(42045897-42045951)
chr3 (56-129)||(33428921-33428993)
chr3 (83-148)||(46164083-46164148)
chr3 (5-42)||(55447175-55447212)
chr3 (55-127)||(31578605-31578677)
chr3 (108-160)||(47337322-47337374)
chr3 (112-160)||(49547592-49547640)
chr3 (107-163)||(51862693-51862748)
[»] scaffold0340 (2 HSPs)
scaffold0340 (5-163)||(10874-11034)
scaffold0340 (79-162)||(10998-11081)
[»] chr6 (23 HSPs)
chr6 (55-163)||(19121955-19122063)
chr6 (55-163)||(17437699-17437808)
chr6 (26-162)||(21394430-21394566)
chr6 (16-127)||(5656510-5656620)
chr6 (58-122)||(26330227-26330291)
chr6 (24-129)||(32520100-32520207)
chr6 (79-146)||(8446961-8447028)
chr6 (79-146)||(8455765-8455832)
chr6 (107-162)||(21394256-21394311)
chr6 (79-146)||(21969161-21969228)
chr6 (24-92)||(23765853-23765923)
chr6 (49-162)||(3960816-3960929)
chr6 (59-104)||(17333397-17333442)
chr6 (79-160)||(26330310-26330391)
chr6 (78-162)||(19121856-19121940)
chr6 (108-155)||(16710444-16710491)
chr6 (79-162)||(17437527-17437610)
chr6 (78-129)||(32942389-32942440)
chr6 (109-163)||(21969298-21969352)
chr6 (78-147)||(17333311-17333379)
chr6 (98-163)||(22017796-22017861)
chr6 (13-45)||(21969200-21969232)
chr6 (78-146)||(22714330-22714398)
[»] scaffold0154 (3 HSPs)
scaffold0154 (79-160)||(6214-6295)
scaffold0154 (2-41)||(6134-6173)
scaffold0154 (77-115)||(6137-6175)
[»] scaffold0066 (2 HSPs)
scaffold0066 (83-160)||(11992-12069)
scaffold0066 (91-160)||(12119-12186)
[»] scaffold0050 (2 HSPs)
scaffold0050 (27-160)||(81970-82103)
scaffold0050 (24-96)||(82128-82205)
[»] scaffold0360 (1 HSPs)
scaffold0360 (107-162)||(4795-4850)
[»] scaffold0198 (3 HSPs)
scaffold0198 (116-162)||(11542-11588)
scaffold0198 (116-162)||(11907-11953)
scaffold0198 (24-126)||(12110-12214)
[»] scaffold0137 (1 HSPs)
scaffold0137 (85-162)||(17102-17179)
[»] scaffold0528 (2 HSPs)
scaffold0528 (79-162)||(1662-1746)
scaffold0528 (79-143)||(1889-1953)
[»] scaffold0140 (1 HSPs)
scaffold0140 (59-125)||(7561-7628)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 1e-64; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 39051244 - 39051372
Alignment:
Q  1 tttcaaaatagtctctgtcttgatcaaaagtttctcaattaagtcttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  39051244 tttcaaaatagtctctgtcttgatcaaaagtttctcaattaagtcttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgacaaa 39051343  T
Q  101 gacagtgactattttaaaatattaataga 129  Q
    |||||||||||||||||||||||||||||    
T  39051344 gacagtgactattttaaaatattaataga 39051372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 107 - 200
Target Start/End: Complemental strand, 39051160 - 39051067
Alignment:
Q  107 gactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagatcaatttggtggtttactctatcatttttcctcttcat 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39051160 gactattttaaaatattaatagaatcaatgactaatttgagagtgacttacaaagatcaatttggtggtttactctatcatttttcctcttcat 39051067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 55264546 - 55264702
Alignment:
Q  1 tttcaaaatagtctctgtcttgatcaaaagtttctcaattaagtc--ttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgata 98  Q
    |||||||||||||  ||||||  ||||||||||||||||||||||  |   |||| |||||||||||| ||||   ||  |||||||||||||||||| |    
T  55264546 tttcaaaatagtcaatgtctttgtcaaaagtttctcaattaagtccatatccatgtgacaaaaacatagagacggggaattaattgagaaacttttgaca 55264645  T
Q  99 aagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgactt 155  Q
    ||||||  |||| |||| ||||||||||||| |||  ||||||||||||||| ||||    
T  55264646 aagacacagactcttttgaaatattaatagattcagagactaatttgagagtcactt 55264702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 49448290 - 49448181
Alignment:
Q  1 tttcaaaatagtctctgtcttgatcaaaagtttctcaattaagtc--ttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgata 98  Q
    ||||||| |||||| ||||||  |||||||||| |||||||  ||  | |||||  |||||||||||||||||| ||||||||||||||||||||||| |    
T  49448290 tttcaaactagtctttgtctttgtcaaaagtttatcaattagatcgctcgtcatatgacaaaaacataaagacagtgatctaattgagaaacttttgaca 49448191  T
Q  99 aagacagtga 108  Q
    ||||||||||    
T  49448190 aagacagtga 49448181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 45921828 - 45921940
Alignment:
Q  48 gtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgag 147  Q
    |||||| |||||||||||||||||||||| |||||||| |||||||||| ||||| |     || ||||||||||||||| | |||  |||||||| |||    
T  45921828 gtcatgtgacaaaaacataaagacaatgacctaattgataaacttttgacaaagaaaaaagttactttaaaatattaataaagtcagagactaattcgag 45921927  T
Q  148 agtgacttacaaa 160  Q
    | |||||||||||    
T  45921928 aatgacttacaaa 45921940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 55264482 - 55264399
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    ||||||| |||||||||| ||||||| |||||||||| ||||||||||||| |||  |||||| |||| ||||||||| |||||    
T  55264482 taattgaaaaacttttgacaaagacaatgactattttgaaatattaatagagtcagtgactaaattgaaagtgacttataaaga 55264399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 87 - 181
Target Start/End: Complemental strand, 13302213 - 13302114
Alignment:
Q  87 aaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa------gatcaatttggtggtttact 180  Q
    |||||||||| |||||||| |||||||| ||| | ||||||||| || |||||||||||||| |||||||||||      ||||||||||||||||||||    
T  13302213 aaacttttgaaaaagacagagactatttgaaa-tgttaatagaagcagggactaatttgagaatgacttacaaagacagggatcaatttggtggtttact 13302115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 13302236 - 13302281
Alignment:
Q  117 aaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  13302236 aaatattaatagaatcgaggactaatttgagagtgacttacaaaga 13302281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 78 - 159
Target Start/End: Original strand, 54091019 - 54091100
Alignment:
Q  78 ctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaa 159  Q
    |||||||||||||||| || |||||||   |||| |||||||||||||| || |||| ||||||||||||| ||||||||||    
T  54091019 ctaattgagaaactttggacaaagacatatactagtttaaaatattaattgagtcaatgactaatttgagaatgacttacaa 54091100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 13119276 - 13119193
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||||||||||||||| |||||||| ||||||||| |||||||||  |  | ||| |||||||||||| | |||||||||||    
T  13119276 taattgagaaacttttgacaaagacagcgactattttgaaatattaaatgcgtgaagaactaatttgagattcacttacaaaga 13119193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 53924452 - 53924526
Alignment:
Q  24 tcaaaagtttctcaattaagt--cttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttga 96  Q
    |||||||||||||||||| ||  ||   |||| ||||||||||||||||||||||||||||||| ||||||||||    
T  53924452 tcaaaagtttctcaattacgttcctcaccatgtgacaaaaacataaagacaatgatctaattgaaaaacttttga 53924526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 33614379 - 33614449
Alignment:
Q  80 aattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagt 150  Q
    ||||||||||||||||  |||||||| ||||| ||| ||||||||||| | ||| ||||||||||||||||    
T  33614379 aattgagaaacttttgtcaaagacagagactagtttgaaatattaataaagtcatggactaatttgagagt 33614449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 5162913 - 5162836
Alignment:
Q  85 agaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||||||||| |||||||| ||||| ||| ||||||||||||| | |  ||||||||||||| ||||||| |||||    
T  5162913 agaaacttttgagaaagacagagactaatttgaaatattaatagagttagagactaatttgagattgacttataaaga 5162836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 13432733 - 13432688
Alignment:
Q  117 aaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||    
T  13432733 aaatattaatagaatcgaggactaatttgagagttacttacaaaga 13432688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 160
Target Start/End: Complemental strand, 44137474 - 44137393
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 160  Q
    ||||||| ||| |||||| ||||||||  |||||||| ||||||||||||| |||  ||||||||||||| | |||||||||    
T  44137474 taattgataaatttttgacaaagacagatactattttgaaatattaatagagtcagagactaatttgagaatcacttacaaa 44137393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 7403253 - 7403321
Alignment:
Q  78 ctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttga 146  Q
    ||||||||||||||||| |  |||||||||| ||| |||||||||||||| | ||||||| ||||||||    
T  7403253 ctaattgagaaacttttaaccaagacagtgattatattaaaatattaataaagtcaaggattaatttga 7403321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 21782221 - 21782173
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaata 127  Q
    ||||||| |||||||||||||||| |||||||||||| |||||||||||    
T  21782221 taattgaaaaacttttgataaagagagtgactattttgaaatattaata 21782173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 54091034 - 54090899
Alignment:
Q  27 aaagtttctcaattaagtc--ttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatatta 124  Q
    ||||||||||||||| |||  | |||||| ||||||||||||| |||   ||||| ||||||||| ||| || |||||||  ||||| ||| ||||||||    
T  54091034 aaagtttctcaattaggtccctcgtcatgtgacaaaaacataatgacctggatcttattgagaaagtttcgacaaagacatagactagtttgaaatatta 54090935  T
Q  125 atagaatcaaggactaatttgagagtgacttacaaa 160  Q
    | ||| |  | ||||||||||| | |||||||||||    
T  54090934 acagagtataagactaatttgaaaatgacttacaaa 54090899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 13119375 - 13119442
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttga 146  Q
    |||||||||||||||| | |||||||| ||||||||| ||||||||||||| |||   ||||||||||    
T  13119375 taattgagaaacttttaacaaagacagggactattttgaaatattaatagagtcataaactaatttga 13119442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 13432756 - 13432830
Alignment:
Q  87 aaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||||||| |||| ||| |||||||| ||||| ||||||||| ||  ||||||||||||| |||||||||||||    
T  13432756 aaacttttgacaaagtcagagactattt-aaaatgttaatagaagcatagactaatttgagaatgacttacaaaga 13432830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 40942664 - 40942585
Alignment:
Q  81 attgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 160  Q
    ||||| |||||||||| ||||||| |||||| ||||||||||||||| |||||   ||||||||||| |||  |||||||    
T  40942664 attgaaaaacttttgacaaagacaatgactagtttaaaatattaataaaatcagacactaatttgagggtggtttacaaa 40942585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 66 - 108
Target Start/End: Complemental strand, 49448191 - 49448149
Alignment:
Q  66 aaagacaatgatctaattgagaaacttttgataaagacagtga 108  Q
    ||||||| ||||||||||||||||||||||| |||||||||||    
T  49448191 aaagacagtgatctaattgagaaacttttgacaaagacagtga 49448149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 54458801 - 54458704
Alignment:
Q  1 tttcaaaatagtctctgtcttgatcaaaagtttctcaattaagtc--ttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttga 96  Q
    ||||||| || | ||||||||  |||||||| |||| |||| |||  | || ||| ||||||||||| ||||||| ||||||||||||||||||||||    
T  54458801 tttcaaactaatatctgtctttgtcaaaagtgtctcgattaggtccctcgttatgtgacaaaaacattaagacaaggatctaattgagaaacttttga 54458704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 159
Target Start/End: Original strand, 11383005 - 11383105
Alignment:
Q  58 aaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttac 157  Q
    ||||||||| | |||  ||| ||||| |||||||||||| ||||||| ||||||||||||||||||| || | |||  ||||||||||| | | ||||||    
T  11383005 aaaaacatagaaacatggatttaattaagaaacttttgacaaagaca-tgactattttaaaatattactaaagtcatagactaatttgataatcacttac 11383103  T
Q  158 aa 159  Q
    ||    
T  11383104 aa 11383105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 39051284 - 39051239
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatatta 124  Q
    ||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  39051284 taattgagaaacttttgatcaagacagagactattttgaaatatta 39051239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13119236 - 13119280
Alignment:
Q  1 tttcaaaatagtctctgtcttgatcaaaagtttctcaattaagtc 45  Q
    ||||||||||||| |||||||  ||||||||||||||||||||||    
T  13119236 tttcaaaatagtcgctgtctttgtcaaaagtttctcaattaagtc 13119280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 39493670 - 39493626
Alignment:
Q  118 aatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||||||| |||||| ||||||||||| |||||||||||||||    
T  39493670 aatattaataaaatcaacgactaatttgaaagtgacttacaaaga 39493626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 40942669 - 40942753
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 163  Q
    |||||||||||||||||| ||| |||  ||||| ||||||||||||||| | |||  ||||||||| | |  |||||||||||||    
T  40942669 taattgagaaacttttgacaaaaacaaagactaatttaaaatattaatatagtcatagactaatttaaaaacgacttacaaagat 40942753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 55264586 - 55264542
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatatt 123  Q
    |||||||||||||||||| ||||||| |||||||||| |||||||    
T  55264586 taattgagaaacttttgacaaagacattgactattttgaaatatt 55264542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 55284022 - 55284110
Alignment:
Q  56 acaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaattt 144  Q
    ||||||||||||||| || |||||||| || |||||||||  ||||||||  ||||  || ||||||||||||||| |  |||||||||    
T  55284022 acaaaaacataaagataaggatctaatcgaaaaacttttggcaaagacagaaactagattgaaatattaatagaattagagactaattt 55284110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 7403045 - 7402994
Alignment:
Q  78 ctaattgagaaacttttgataaagacagtgactattttaaaatattaataga 129  Q
    |||||||| |||| ||||||||||| || ||||| |||||||||||||||||    
T  7403045 ctaattgaaaaacatttgataaagaaagagactaatttaaaatattaataga 7402994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 160
Target Start/End: Complemental strand, 53924469 - 53924391
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 160  Q
    |||||||||||||||||| ||||||| |||||| |||    |||||||||| |||   ||||||||||| ||||||||||||    
T  53924469 taattgagaaacttttgacaaagacaatgactagttt---gtattaatagagtcacatactaatttgagggtgacttacaaa 53924391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 39051167 - 39051236
Alignment:
Q  26 aaaagtttctcaattaagtc--ttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttt 93  Q
    ||||||||||||||||||||  | |||||| |||||||| ||| |||||  |||||| ||||||||||||    
T  39051167 aaaagtttctcaattaagtcactcgtcatgtgacaaaaatatatagacagagatctagttgagaaacttt 39051236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13119415 - 13119371
Alignment:
Q  1 tttcaaaatagtctctgtcttgatcaaaagtttctcaattaagtc 45  Q
    ||||||||||||| |||||||  | ||||||||||||||||||||    
T  13119415 tttcaaaatagtccctgtctttgttaaaagtttctcaattaagtc 13119371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 21782181 - 21782225
Alignment:
Q  1 tttcaaaatagtctctgtcttgatcaaaagtttctcaattaagtc 45  Q
    ||||||||||||| || |||| ||||||||||| |||||||||||    
T  21782181 tttcaaaatagtcactctctttatcaaaagtttttcaattaagtc 21782225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 49448246 - 49448298
Alignment:
Q  75 gatctaattgagaaacttttgataaagacagtgactattttaaaatattaata 127  Q
    ||||||||||| |||||||||| |||||||  ||||| ||| |||||||||||    
T  49448246 gatctaattgataaacttttgacaaagacaaagactagtttgaaatattaata 49448298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 51103467 - 51103403
Alignment:
Q  84 gagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgaga 148  Q
    ||||||||||||| |||| || |||| ||||| || |||||||||| ||| |||| |||||||||    
T  51103467 gagaaacttttgacaaaggcaatgaccattttgaattattaatagagtcagggaccaatttgaga 51103403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 6e-36; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 43 - 163
Target Start/End: Complemental strand, 38784013 - 38783893
Alignment:
Q  43 gtcttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaat 142  Q
    |||||||| || |||||||| | | |||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||| ||| ||||||||    
T  38784013 gtcttgtcgtgtgacaaaaatacagagacaatgatctaattaagaaacttttgacaaagacaatgactattttaaaatattaatagagtcatggactaat 38783914  T
Q  143 ttgagagtgacttacaaagat 163  Q
    |||| ||||||||||||||||    
T  38783913 ttgaaagtgacttacaaagat 38783893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 845153 - 845023
Alignment:
Q  1 tttcaaaatagtctctgtcttgatcaaaagtttctcaattaagt--cttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgata 98  Q
    |||||||||| | | ||||||  ||| |||||||||||||||||  ||  ||||| |||||||||||| |||||| |||| ||||||||||| ||||| |    
T  845153 tttcaaaataatatttgtctttgtcagaagtttctcaattaagtgtctcatcatgtgacaaaaacatagagacaaagatccaattgagaaacatttgaca 845054  T
Q  99 aagacagtgactattttaaaatattaataga 129  Q
    ||||||  ||||||||| |||||||||||||    
T  845053 aagacaaggactattttgaaatattaataga 845023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 163
Target Start/End: Complemental strand, 38576735 - 38576575
Alignment:
Q  4 caaaatagtctctgtcttgatcaaaagtttctcaattaagtc--ttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaag 101  Q
    |||| |||||| |||||| ||||||| |||||||||||| ||  |  |||||  |||||||||||| || |  ||  ||||||| || ||||||||||||    
T  38576735 caaactagtctttgtctttatcaaaaatttctcaattaaatccctcatcatgtaacaaaaacataaggatagagaa-taattgaaaatcttttgataaag 38576637  T
Q  102 acagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 163  Q
    |||| ||||  ||| |||||||||||||||||| ||||||||||||| ||| ||||||||||    
T  38576636 acagagactggtttgaaatattaatagaatcaaagactaatttgagaatgatttacaaagat 38576575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 15395358 - 15395492
Alignment:
Q  16 tgtcttgatcaaaagtttctcaattaagtctt--gtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactatt 113  Q
    |||||| |||||||||||||||||||||| ||  |  |||  ||||||||||| ||||   || |||||||| |||||||||| ||| ||||| ||||||    
T  15395358 tgtctttatcaaaagtttctcaattaagtgtttcgctatgtaacaaaaacatagagacggagacctaattgaaaaacttttgacaaaaacagtaactatt 15395457  T
Q  114 ttaaaatattaatagaatcaaggactaatttgaga 148  Q
    |||||||||||||| |  ||| |||||||||||||    
T  15395458 ttaaaatattaataaatacaatgactaatttgaga 15395492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 49 - 163
Target Start/End: Original strand, 7790375 - 7790488
Alignment:
Q  49 tcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgaga 148  Q
    ||||| |||||||| |||| ||||| || ||||||||||||||||||||||||| ||  |||| ||| ||||||||||||| || |  ||||||||||||    
T  7790375 tcatgtgacaaaaatataatgacaaagacctaattgagaaacttttgataaagatagaaactaatttgaaatattaatagagtc-ataactaatttgaga 7790473  T
Q  149 gtgacttacaaagat 163  Q
     ||||||||| ||||    
T  7790474 atgacttacacagat 7790488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 162
Target Start/End: Original strand, 10595439 - 10595578
Alignment:
Q  24 tcaaaagtttctcaattaagtctt--gtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaata 121  Q
    |||||||||||||||||| ||| |  |||||| ||||||| |||||||| |  || || |||||||||||||||| ||||||| |||||| ||| |||||    
T  10595439 tcaaaagtttctcaattaggtccttcgtcatgtgacaaaa-cataaagaaatagaccttattgagaaacttttgacaaagacaatgactaatttgaaata 10595537  T
Q  122 ttaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||||| | | ||| |||||||| | || ||||||||||    
T  10595538 ttaatagagttatggattaatttgacaatgtcttacaaaga 10595578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 56 - 161
Target Start/End: Complemental strand, 27293388 - 27293283
Alignment:
Q  56 acaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgactt 155  Q
    |||||||||||||||||| || ||||||||||||||||||  ||||| |   |||| ||| ||||||||||||| |||  ||||||||||||| ||| ||    
T  27293388 acaaaaacataaagacaaagacctaattgagaaacttttggcaaagataagaactaatttgaaatattaatagagtcagagactaatttgagaatgattt 27293289  T
Q  156 acaaag 161  Q
    ||||||    
T  27293288 acaaag 27293283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 6219711 - 6219627
Alignment:
Q  78 ctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||||||||| |||||| |||||||||||||| ||||||||||||||| |||||  ||||| ||| ||| ||||||| |||||    
T  6219711 ctaattgagaaatttttgacaaagacagtgactaatttaaaatattaataaaatcatagactagtttaagaatgacttataaaga 6219627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 34835633 - 34835762
Alignment:
Q  1 tttcaaaatagtctctgtcttgatcaaaagtttctcaattaagtc--ttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgata 98  Q
    ||||||| |||||||||||||  ||||||||||||||||| ||||  || ||||| |||||||||||||||||  ||| ||||||   |||||||||  |    
T  34835633 tttcaaactagtctctgtctttgtcaaaagtttctcaatttagtcctttatcatgtgacaaaaacataaagac-gtgacctaattcgaaaacttttggca 34835731  T
Q  99 aagacagtgactattttaaaatattaataga 129  Q
    | || || ||||| |||||||||||||||||    
T  34835732 atgatagggactaatttaaaatattaataga 34835762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 40649862 - 40649779
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||||||||||||| | |||||||   || ||||| ||||||||||||||| ||| |||||||||||| | |||||||||||    
T  40649862 taattgagaaacttttaacaaagacatgtaccattttgaaatattaatagaattaagaactaatttgagaatcacttacaaaga 40649779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 46410826 - 46410900
Alignment:
Q  88 aacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||||||||||||||| ||||||||| |||||||| |||| |||  |||||| |||||| | |||||||||||    
T  46410826 aacttttgataaagacagagactattttgaaatattattagagtcatagactaaattgagaatcacttacaaaga 46410900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 15395278 - 15395209
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgaga 148  Q
    ||||||||||  |||| | |||||||| ||||||||||||||||||||||| |||  |||||||||||||    
T  15395278 taattgagaattttttaacaaagacagagactattttaaaatattaatagagtcatagactaatttgaga 15395209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 40649847 - 40649946
Alignment:
Q  26 aaaagtttctcaattaagtc--ttgtcatgcgacaaaaacataaagacaatga-tctaattgagaaacttttgataaagacagtgactattttaaaatat 122  Q
    ||||||||||||||||||||  | |||||| || ||||||||| | ||| ||| ||||||| |||||||||||| ||||||| |||||||||| ||||||    
T  40649847 aaaagtttctcaattaagtccctcgtcatgtgaaaaaaacatagaaaca-tgagtctaattaagaaacttttgacaaagacaatgactattttgaaatat 40649945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 10377539 - 10377623
Alignment:
Q  78 ctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||||||||| |||||| | | |||  ||||| ||| ||||||||||||| |||| ||||||||||| | |||||||||||||    
T  10377539 ctaattgagaaaattttgacacaaacatggactaatttgaaatattaatagagtcaaagactaatttgataatgacttacaaaga 10377623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 30570172 - 30570270
Alignment:
Q  24 tcaaaagtttctcaattaagtctt--gtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaata 121  Q
    |||||||||||||||||||||| |  || ||  ||||||||||||||||||  ||||||||||| |||||||||| ||| | | |||||| |||||||||    
T  30570172 tcaaaagtttctcaattaagtcattcgttatatgacaaaaacataaagacagcgatctaattgataaacttttgacaaaaata-tgactaatttaaaata 30570270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 146
Target Start/End: Complemental strand, 4066986 - 4066923
Alignment:
Q  83 tgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttga 146  Q
    |||||||||||||| |||||||||||| ||||| || |||||||||| ||| |||| |||||||    
T  4066986 tgagaaacttttgacaaagacagtgaccattttgaattattaatagagtcagggaccaatttga 4066923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 28504784 - 28504713
Alignment:
Q  91 ttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||| ||| |||| ||||| ||| ||||||||||||| |||  ||||||||||||| |||||||||||||    
T  28504784 ttttgacaaaaacagagactagtttgaaatattaatagagtcatagactaatttgagaatgacttacaaaga 28504713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 34835672 - 34835570
Alignment:
Q  80 aattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaa-agatcaatttggtggttta 178  Q
    ||||||||||||||||| |||||||| ||||| ||| ||||||| ||| | | ||| ||||||||  || ||||||||||  || |||||| ||||||||    
T  34835672 aattgagaaacttttgacaaagacagagactagtttgaaatattgataaagttaagaactaatttaggaatgacttacaagggaacaatttagtggttta 34835573  T
Q  179 ctc 181  Q
    |||    
T  34835572 ctc 34835570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 38576698 - 38576780
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaag 161  Q
    ||||||||||| ||||||||||||||  ||||| |||  |||||||||| | ||||| |||||||||| ||||  ||||||||    
T  38576698 taattgagaaatttttgataaagacaaagactagtttgtaatattaatatagtcaagtactaatttgaaagtgggttacaaag 38576780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 146
Target Start/End: Complemental strand, 23399634 - 23399543
Alignment:
Q  58 aaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaa---tattaatagaatcaaggactaatttga 146  Q
    ||||||||| ||| || | |||||||||||||||||||| ||| ||| |||||| ||| |||   |||||||||| | ||||||||||||||    
T  23399634 aaaaacatagagataacgttctaattgagaaacttttgacaaaaacaatgactaatttgaaatagtattaatagagttaaggactaatttga 23399543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 96
Target Start/End: Original strand, 12951710 - 12951758
Alignment:
Q  48 gtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttga 96  Q
    ||||||||||||||| ||  |||| ||||||||||||||||||||||||    
T  12951710 gtcatgcgacaaaaatattgagactatgatctaattgagaaacttttga 12951758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 34535394 - 34535330
Alignment:
Q  82 ttgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttga 146  Q
    ||||||||| ||||| |||  ||||||| |||||||  |||||||||| ||||||||||||||||    
T  34535394 ttgagaaacgtttgacaaattcagtgaccattttaagttattaatagagtcaaggactaatttga 34535330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 128
Target Start/End: Original strand, 28504802 - 28504891
Alignment:
Q  45 cttgtcatgcgacaaaaacataaagacaatgatctaattg------agaaacttttgataaagacagtgactattttaaaatattaatag 128  Q
    ||||||||| || ||||||||||||||||||| |||||||      |||||| ||||| ||| |||| | ||| ||||||||||||||||    
T  28504802 cttgtcatgtgataaaaacataaagacaatgacctaattgaaattaagaaacgtttgagaaatacagagcctaatttaaaatattaatag 28504891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 1818377 - 1818458
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 160  Q
    |||| ||||||| ||| ||||| ||||  |||||||||||||||||||||| |||   | |||||||||| | |||||||||    
T  1818377 taatcgagaaacatttaataaaaacagaaactattttaaaatattaatagagtcagatattaatttgagaatcacttacaaa 1818458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 6219678 - 6219774
Alignment:
Q  9 tagtctctgtcttgatcaaaagtttctcaattaagtc--ttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagac 103  Q
    ||||| |||||||  |||||| ||||||||||| |||  |  | ||| |||||||||||||||||  ||| |||||||||| |||||||| ||||||    
T  6219678 tagtcactgtctttgtcaaaaatttctcaattaggtccctcattatgtgacaaaaacataaagacggtgacctaattgagatacttttgacaaagac 6219774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 46410722 - 46410665
Alignment:
Q  87 aaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaattt 144  Q
    |||||||||| |||||| | ||||||||| ||||||||||| | ||| ||||||||||    
T  46410722 aaacttttgacaaagactgagactattttgaaatattaatatattcatggactaattt 46410665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 8793021 - 8792969
Alignment:
Q  110 tattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||| ||||||||||||| |    |||||||||||||||||||||||||||    
T  8793021 tattttgaaatattaatagagttggagactaatttgagagtgacttacaaaga 8792969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 113
Target Start/End: Original strand, 31063373 - 31063409
Alignment:
Q  77 tctaattgagaaacttttgataaagacagtgactatt 113  Q
    |||||||||||||||||||| |||||||| |||||||    
T  31063373 tctaattgagaaacttttgacaaagacagagactatt 31063409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 46410857 - 46410814
Alignment:
Q  1 tttcaaaatagtctctgtcttgatcaaaagtttctcaattaagtc 45  Q
    ||||||||||||||||||||| |||||||| ||||| ||||||||    
T  46410857 tttcaaaatagtctctgtctttatcaaaag-ttctcgattaagtc 46410814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 2e-32; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 29490537 - 29490376
Alignment:
Q  1 tttcaaaatagtctctgtcttgatcaaaagtttctcaattaa--gtcttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgata 98  Q
    |||||||||||| ||| |||| |||||||||||||||| |||  |||| |||||| | |||||||| | |||||  |||||||||||||||||||| | |    
T  29490537 tttcaaaatagtgtctatctttatcaaaagtttctcaaataaatgtctcgtcatgtgccaaaaacacagagacagagatctaattgagaaactttttaca 29490438  T
Q  99 aagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 160  Q
    ||||||   |||||||||||||||||||| |||||  ||||||||||| |||||||||||||    
T  29490437 aagacaaaaactattttaaaatattaatataatcatagactaatttgatagtgacttacaaa 29490376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 33229557 - 33229662
Alignment:
Q  24 tcaaaagtttctcaattaagtc--ttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaata 121  Q
    |||||||||||||||||| |||  | |||||| ||||||||||||||||||  |||||||||||||||||||||| ||| | || ||||| |||||||||    
T  33229557 tcaaaagtttctcaattaggtccctcgtcatgtgacaaaaacataaagacagggatctaattgagaaacttttgacaaacagagagactaatttaaaata 33229656  T
Q  122 ttaata 127  Q
    ||||||    
T  33229657 ttaata 33229662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 28 - 162
Target Start/End: Original strand, 23961584 - 23961720
Alignment:
Q  28 aagtttctcaattaagt--cttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatattaa 125  Q
    |||||| ||||||||||  ||||||| | |||||| ||||| |||||   ||||||||| ||||||||||||||||  || ||||||||| |||||||||    
T  23961584 aagtttttcaattaagtgtcttgtcaagtgacaaagacatagagacatgaatctaattgtgaaacttttgataaagttagggactattttgaaatattaa 23961683  T
Q  126 tagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    | ||||||  |||| |||||| | |||||||||||||    
T  23961684 ttgaatcagagactgatttgaaaatgacttacaaaga 23961720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 160
Target Start/End: Complemental strand, 10028852 - 10028747
Alignment:
Q  55 gacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgact 154  Q
    ||||||||||||||||||  || ||||||||||||||||||  ||||| || ||||  ||| ||||||||||||| ||   ||||||||||||| |||||    
T  10028852 gacaaaaacataaagacatggacctaattgagaaacttttggcaaagatagagactgatttgaaatattaatagagtcggtgactaatttgagaatgact 10028753  T
Q  155 tacaaa 160  Q
    ||||||    
T  10028752 tacaaa 10028747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 21136752 - 21136596
Alignment:
Q  1 tttcaaaatagtctctgtcttgatcaaaagtttctcaattaagtctt--gtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgata 98  Q
    ||||||||||||| || ||||  ||||||  |||||||||| || ||  |||| | |||||||  ||||||| |  || |||||||| |||||||||| |    
T  21136752 tttcaaaatagtcactatctttgtcaaaaaattctcaattaggtttttcgtcaagtgacaaaagtataaagaaagggacctaattgaaaaacttttgaca 21136653  T
Q  99 aagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgactt 155  Q
    |||| |  ||||||||| ||||||||||||| |||| ||||||||||||| ||||||    
T  21136652 aagataaggactattttgaaatattaatagagtcaaagactaatttgagaatgactt 21136596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 5840410 - 5840355
Alignment:
Q  107 gactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||||||||||||||||||||||||  ||||||||||||||| |||||||||||    
T  5840410 gactattttaaaatattaatagaatcagagactaatttgagagtaacttacaaaga 5840355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 80 - 162
Target Start/End: Original strand, 10028869 - 10028951
Alignment:
Q  80 aattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||| |||| ||||| |||||||  ||||| ||| ||||||||||| | |||| |||||||||||||||||| ||||||||    
T  10028869 aattgaaaaacctttgaaaaagacaacgactagtttgaaatattaataaagtcaaagactaatttgagagtgacctacaaaga 10028951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 21136711 - 21136793
Alignment:
Q  78 ctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 160  Q
    |||||||||||  |||||| ||||| |||||||||||| |||||||||||||  ||| ||||||||| ||| | |||||||||    
T  21136711 ctaattgagaattttttgacaaagatagtgactattttgaaatattaatagagacaaagactaatttaagaattacttacaaa 21136793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 180
Target Start/End: Complemental strand, 10028737 - 10028629
Alignment:
Q  78 ctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa------gatcaatttgg 171  Q
    ||||||||||||||||||  || || |  ||||| ||| ||||||||||||| |||  ||||||||||||| |||||||||||      |||||||||||    
T  10028737 ctaattgagaaacttttggcaaggataaagactaatttgaaatattaatagagtcagtgactaatttgagaatgacttacaaatacattgatcaatttgg 10028638  T
Q  172 tggtttact 180  Q
    |||||||||    
T  10028637 tggtttact 10028629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 5840958 - 5841041
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    ||||| ||| |||||||||||||| ||  ||||  |||||||||||||||| ||||  |||| ||||| |||||| ||||||||    
T  5840958 taattcagacacttttgataaagatagaaactaaattaaaatattaatagagtcaaaaactattttgaaagtgacatacaaaga 5841041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 148
Target Start/End: Complemental strand, 23768826 - 23768775
Alignment:
Q  97 taaagacagtgactattttaaaatattaatagaatcaaggactaatttgaga 148  Q
    ||||||||| ||||||||||||||||||||| ||| |  |||||||||||||    
T  23768826 taaagacagagactattttaaaatattaataaaattatagactaatttgaga 23768775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 99
Target Start/End: Complemental strand, 29490617 - 29490540
Alignment:
Q  24 tcaaaagtttctcaattaagtctt-gtcatgcgacaaaaacataaa--gacaatgatctaattgagaaacttttgataa 99  Q
    |||||||||||||| |||| |||| ||| || |||||||||||| |  ||||| |||||||||||||||||||||||||    
T  29490617 tcaaaagtttctca-ttaaatcttcgtcgtgtgacaaaaacatatatagacaaagatctaattgagaaacttttgataa 29490540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 153
Target Start/End: Original strand, 5847118 - 5847192
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgac 153  Q
    ||||| ||| |||||||||||||| ||  ||||  |||||||||||||||| ||||  |||| ||||||||||||    
T  5847118 taattcagacacttttgataaagatagaaactaaattaaaatattaatagagtcaaaaactattttgagagtgac 5847192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 32029634 - 32029700
Alignment:
Q  80 aattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttga 146  Q
    |||||||||| |||||| |||||||   ||||||||||||||| |||||| |||  |||||||||||    
T  32029634 aattgagaaatttttgacaaagacatgaactattttaaaatataaatagagtcagagactaatttga 32029700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 42847830 - 42847900
Alignment:
Q  78 ctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgaga 148  Q
    |||||||| |||||||||| ||||||| | |||| | | ||||||||||||| |||| |||| ||||||||    
T  42847830 ctaattgaaaaacttttgacaaagacaataactagtatgaaatattaatagagtcaatgacttatttgaga 42847900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 41424620 - 41424661
Alignment:
Q  55 gacaaaaacataaagacaatgatctaattgagaaacttttga 96  Q
    |||||||||||| || ||||||| ||||||||||||||||||    
T  41424620 gacaaaaacatagaggcaatgatataattgagaaacttttga 41424661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 9e-29; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 12427998 - 12427835
Alignment:
Q  1 tttcaaaatagtctctgtcttgatcaaaagtttctcaattaagtctt--gtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgata 98  Q
    ||||||| |||||  ||||||  |||||||||| ||||||  ||||   |||||| |||||||||||||||||||||| |||| ||||||| |||||  |    
T  12427998 tttcaaactagtccatgtctttgtcaaaagtttttcaatttggtctctcgtcatgtgacaaaaacataaagacaatgacctaaatgagaaatttttggca 12427899  T
Q  99 aagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||| | |||||| ||||||||||||||||| ||| | |||||||||||| |||||||||||||    
T  12427898 aagataatgactaatttaaaatattaatagagtcatgaactaatttgagaatgacttacaaaga 12427835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 42710002 - 42709919
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||| ||   |||| |||||||| | |||||||||||    
T  42710002 taattgagaaacttttgacaaagacattgactattttaaaatattaatagagtcggagactgatttgagaatcacttacaaaga 42709919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 48 - 160
Target Start/End: Original strand, 35660930 - 35661042
Alignment:
Q  48 gtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgag 147  Q
    |||||| |||||||||||||| | |  |||||||||||||||||||| | |||||||   |||| ||| |||||||||||||||| | || ||||||||     
T  35660930 gtcatgtgacaaaaacataaaaagagcgatctaattgagaaacttttaacaaagacaagaactaatttgaaatattaatagaatcgaagagtaatttgat 35661029  T
Q  148 agtgacttacaaa 160  Q
    | |||||||||||    
T  35661030 aatgacttacaaa 35661042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 41008915 - 41008997
Alignment:
Q  78 ctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 160  Q
    ||||||||||||||||| | ||||| || ||||||||||||||||||||||| |||  || |||||||| | |||||||||||    
T  41008915 ctaattgagaaacttttaacaaagatagagactattttaaaatattaatagagtcagagattaatttgaaaatgacttacaaa 41008997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 10525054 - 10524931
Alignment:
Q  24 tcaaaagtttctcaattaagtc--ttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaata 121  Q
    |||||||||||||||||| |||  | |||||| |||||||||||||||| |  |||||||||||||||||||||| ||  |||  ||||| |||  ||||    
T  10525054 tcaaaagtttctcaattaggtccctcgtcatgtgacaaaaacataaagatagggatctaattgagaaacttttgacaa--acatagactaatttgtaata 10524957  T
Q  122 ttaatagaatcaaggactaatttgaga 148  Q
    |||||| | |||| |||||||||||||    
T  10524956 ttaataaagtcaa-gactaatttgaga 10524931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 32296396 - 32296470
Alignment:
Q  55 gacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatattaataga 129  Q
    |||||||||||| |||||||||||||||||| |||||||||| ||||| |  || | ||||||||||||| ||||    
T  32296396 gacaaaaacatagagacaatgatctaattgaaaaacttttgacaaagatatagattgttttaaaatattactaga 32296470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 157
Target Start/End: Complemental strand, 41008867 - 41008801
Alignment:
Q  91 ttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttac 157  Q
    ||||||||||||| |  ||||||||||||||||||||||||||  ||||| ||||||| ||||||||    
T  41008867 ttttgataaagacggaaactattttaaaatattaatagaatcacagactagtttgagaatgacttac 41008801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 16953305 - 16953226
Alignment:
Q  28 aagtttctcaattaagtc--ttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacag 105  Q
    ||||||||||||||||||  | ||||||  |||||||||||||||||   |||||||||| |||||||||| ||||||||    
T  16953305 aagtttctcaattaagtccatcgtcatgtaacaaaaacataaagacatgaatctaattgacaaacttttgacaaagacag 16953226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 30935324 - 30935208
Alignment:
Q  48 gtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgag 147  Q
    |||||| |||||||||||||||| || ||||||| ||| |||||||||| ||||| |   |||| ||| ||||||||||||| || |  |||||||| ||    
T  30935324 gtcatgtgacaaaaacataaagataaggatctaagtgaaaaacttttgacaaagatatgaactagtttgaaatattaatagagtctaaaactaatttaag 30935225  T
Q  148 agtgac-ttacaaagat 163  Q
    | |||| ||||||||||    
T  30935224 aatgactttacaaagat 30935208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 163
Target Start/End: Complemental strand, 16808098 - 16808055
Alignment:
Q  120 tattaatagaatcaaggactaatttgagagtgacttacaaagat 163  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    
T  16808098 tattaatagaatcgaggactaatttgagagttacttacaaagat 16808055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 26752010 - 26752084
Alignment:
Q  80 aattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgact 154  Q
    |||||| |||||||||| |||||||  ||||||||||||||| ||| | | |||  |||||||||||||||||||    
T  26752010 aattgaaaaacttttgacaaagacaaagactattttaaaataataacaaagtcagagactaatttgagagtgact 26752084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 16830378 - 16830293
Alignment:
Q  78 ctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 163  Q
    ||||||||||||||| ||| |||||||   |||| |||  ||||||||||||||     |||||||||||||||||||||||||||    
T  16830378 ctaattgagaaacttatgacaaagacatgcactagtttggaatattaatagaatttgacactaatttgagagtgacttacaaagat 16830293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 162
Target Start/End: Complemental strand, 22794706 - 22794637
Alignment:
Q  93 ttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    ||||||||||||  ||||| |||||||||| |||||| || | ||||||||||| | |||||||||||||    
T  22794706 ttgataaagacaaagactagtttaaaatatcaatagagtcgatgactaatttgaaaatgacttacaaaga 22794637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 43669487 - 43669540
Alignment:
Q  107 gactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    ||||||||||||||||||||||| |||  ||||||||||| |||| ||||||||||    
T  43669487 gactattttaaaatattaatagagtca--gactaatttgaaagtggcttacaaaga 43669540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 85
Target Start/End: Original strand, 47589490 - 47589529
Alignment:
Q  46 ttgtcatgcgacaaaaacataaagacaatgatctaattga 85  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  47589490 ttgtcatgtgacaaaaacataaagaccatgatctaattga 47589529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 163
Target Start/End: Original strand, 10525036 - 10525115
Alignment:
Q  78 ctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 163  Q
    ||||||||||||||||||| ||||||      || ||| ||||||||||||  ||  |||| ||||||||||||||||||||||||    
T  10525036 ctaattgagaaacttttgacaaagac------tagtttgaaatattaatagggtcggggacaaatttgagagtgacttacaaagat 10525115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 33384156 - 33384106
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaataga 129  Q
    |||||||||||||||| |  ||||||  |||||||||||||||||||||||    
T  33384156 taattgagaaacttttaacgaagacatagactattttaaaatattaataga 33384106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 42710135 - 42710202
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgaga 148  Q
    |||||||||||||||  ||||||||||  |||||||| |||||||||| || || | |||||||||||||    
T  42710135 taattgagaaactttcaataaagacag--actattttgaaatattaatggagtcgacgactaatttgaga 42710202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 16810495 - 16810450
Alignment:
Q  117 aaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    ||||||||||| | ||  ||||||||||||||||||||||||||||    
T  16810495 aaatattaatatagtcggggactaatttgagagtgacttacaaaga 16810450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 5964225 - 5964265
Alignment:
Q  75 gatctaattgagaaacttttgataaagacagtgactatttt 115  Q
    ||||||| |||||||| |||||||||||||||||| |||||    
T  5964225 gatctaactgagaaacgtttgataaagacagtgaccatttt 5964265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 24451952 - 24451996
Alignment:
Q  119 atattaatagaatcaaggactaatttgagagtgacttacaaagat 163  Q
    ||||||||||| ||| ||| ||||||||||||| |||||||||||    
T  24451952 atattaatagagtcagggattaatttgagagtggcttacaaagat 24451996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 1e-27; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 32502977 - 32502816
Alignment:
Q  1 tttcaaaatagtctctgtcttgatcaaaagtttctcaattaa--gtcttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgata 98  Q
    |||||||||||||| ||||||  |||||| ||| ||||||||  |||| |||||| |||||||||||| ||||||||||||||||||||||| ||| | |    
T  32502977 tttcaaaatagtctttgtctttgtcaaaattttttcaattaaatgtctcgtcatgtgacaaaaacatagagacaatgatctaattgagaaacatttaaca 32502878  T
Q  99 aagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 160  Q
    ||||||   |||||||| ||||| ||||| | | | | |||||||||||| |||||||||||    
T  32502877 aagacatgaactattttgaaatactaataaagtgaggaactaatttgagaatgacttacaaa 32502816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 5 - 161
Target Start/End: Original strand, 22191431 - 22191590
Alignment:
Q  5 aaaatagtctctgtcttgatcaaaagtttctcaattaagtc--ttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaa-g 101  Q
    |||||||||| ||||||  ||||||||||||| ||||||||  | |||||| |||||||| | | ||| |   |||||||||| |||||||| | ||| |    
T  22191431 aaaatagtctttgtctttgtcaaaagtttctctattaagtccctcgtcatgtgacaaaaataaagagatatgaatctaattgaaaaacttttaacaaaag 22191530  T
Q  102 acagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaag 161  Q
    |||  ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  22191531 acatagactattttaaaatattaatagagtcagggactaatttgagagtgacttacaaag 22191590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 33940031 - 33940112
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 160  Q
    |||||||||||||||||| ||| |||||||||||||| ||||||||||| | |||| ||||||||||||| | |||||||||    
T  33940031 taattgagaaacttttgaaaaaaacagtgactattttgaaatattaataaagtcaacgactaatttgagaatcacttacaaa 33940112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 17658861 - 17658784
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgactta 156  Q
    ||||||||||| |||||| ||||||| |||||||||| ||||||||||||| |   |||||||||||| |||||||||    
T  17658861 taattgagaaatttttgacaaagacaatgactattttgaaatattaatagagttggggactaatttgatagtgactta 17658784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 32013973 - 32014053
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 160  Q
    ||||||||||| |||||| |||||||||||||||||| |||||| |||||| |||  ||||||||||||| | |||||||||    
T  32013973 taattgagaaa-ttttgacaaagacagtgactattttgaaatatcaatagagtcatagactaatttgagaatcacttacaaa 32014053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 6511062 - 6511188
Alignment:
Q  1 tttcaaaatagtctctgtcttgatcaaaagtttctcaatta-agtcttg-tcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgata 98  Q
    |||||||||||||||  ||||  |||||| |||||||| || | ||||  ||||| ||||||||||||||||||  || | ||||||||||||||||| |    
T  6511062 tttcaaaatagtctccatctttgtcaaaaatttctcaaatagattcttcatcatgtgacaaaaacataaagacatggaccaaattgagaaacttttgaca 6511161  T
Q  99 aagacagtgactattttaaaatattaa 125  Q
    || ||||  |||| |||||||||||||    
T  6511162 aacacagaaactaatttaaaatattaa 6511188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 32503040 - 32503121
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 160  Q
    |||||||||| ||||||| ||||||| ||||||||||||||||| |||||| |    ||||||||||| | |||||||||||    
T  32503040 taattgagaatcttttgacaaagacaatgactattttaaaatatcaatagagtgtgagactaatttgataatgacttacaaa 32503121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 39760235 - 39760178
Alignment:
Q  72 aatgatctaattgagaaacttttgataaagacagtgactattttaaaatattaataga 129  Q
    |||||| |||||||||||||||||||||| |||  ||||||||| |||||||||||||    
T  39760235 aatgatttaattgagaaacttttgataaaaacatagactattttgaaatattaataga 39760178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 17658821 - 17658907
Alignment:
Q  1 tttcaaaatagtctctgtcttgatcaaaagtttctcaattaag--tcttgtcatgcgacaaaaacataaagacaatgatctaattga 85  Q
    |||||||||||||  ||||||  |||||| |||||||||||||  ||| |||||| |||||||||| | ||| ||||||||||||||    
T  17658821 tttcaaaatagtcattgtctttgtcaaaaatttctcaattaagtctctcgtcatgtgacaaaaacaaagagaaaatgatctaattga 17658907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 76 - 162
Target Start/End: Complemental strand, 6511105 - 6511019
Alignment:
Q  76 atctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    ||||| |||||||| |||||| |||||  | ||||||||| ||||||||| |||||||  ||||||||||| | ||||||| |||||    
T  6511105 atctatttgagaaatttttgacaaagatggagactattttgaaatattaacagaatcatagactaatttgaaaatgacttataaaga 6511019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 32503076 - 32502980
Alignment:
Q  5 aaaatagtctctgtcttgatcaaaagtttctcaattaagtc--ttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataa 99  Q
    |||||||||  ||||||  ||||||| ||||||||||||||  | |||||  || ||||||||| |||||  ||||||||||| |||||||||||||    
T  32503076 aaaatagtcattgtctttgtcaaaagattctcaattaagtccctcgtcatatgataaaaacatagagacagagatctaattgataaacttttgataa 32502980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 8033868 - 8033920
Alignment:
Q  75 gatctaattgagaaacttttgataaagacagtgactattttaaaatattaata 127  Q
    |||||||||||||||||||||| |||||||   || |||||||||||||||||    
T  8033868 gatctaattgagaaacttttgacaaagacataaaccattttaaaatattaata 8033920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 39760375 - 39760459
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 163  Q
    ||||||||| | |||||| ||||| |   |||||||| ||||||||||| | ||| |||||||||||||| | ||||||||||||    
T  39760375 taattgagagatttttgacaaagatatgaactattttgaaatattaatatagtcatggactaatttgagaatcacttacaaagat 39760459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 22191467 - 22191420
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaat 126  Q
    |||| ||||||||||||| |||||||  ||||||||||||||||||||    
T  22191467 taatagagaaacttttgacaaagacaaagactattttaaaatattaat 22191420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 8033595 - 8033692
Alignment:
Q  1 tttcaaaatagtctctgtcttgatcaaaagtttctcaattaag--tcttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttga 96  Q
    |||||||||| ||  ||||||  | ||||||||||||||||||  ||| |||||  |||||||||||| |||||   |||||||||| ||||||||||    
T  8033595 tttcaaaataatccttgtctttgttaaaagtttctcaattaagtctctcgtcatatgacaaaaacatagagacatgtatctaattgaaaaacttttga 8033692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 33940004 - 33939958
Alignment:
Q  77 tctaattgagaaacttttgataaagacagtgactattttaaaatatt 123  Q
    |||||||||||||||||||| |||||||   ||||||||||||||||    
T  33940004 tctaattgagaaacttttgacaaagacatatactattttaaaatatt 33939958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 39760332 - 39760286
Alignment:
Q  77 tctaattgagaaacttttgataaagacagtgactattttaaaatatt 123  Q
    |||| ||||||||||||| | ||||||| ||||||||||||||||||    
T  39760332 tctatttgagaaacttttaacaaagacaatgactattttaaaatatt 39760286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 107 - 156
Target Start/End: Complemental strand, 17673001 - 17672952
Alignment:
Q  107 gactattttaaaatattaatagaatcaaggactaatttgagagtgactta 156  Q
    ||||||||| |||||||||||||||    |||||||||||||||||||||    
T  17673001 gactattttgaaatattaatagaattggagactaatttgagagtgactta 17672952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 39760188 - 39760229
Alignment:
Q  1 tttcaaaatagtctctgtcttgatcaaaagtttctcaattaa 42  Q
    |||||||||||||| ||| || ||||||||||||||||||||    
T  39760188 tttcaaaatagtctatgtttttatcaaaagtttctcaattaa 39760229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 44327969 - 44327904
Alignment:
Q  98 aaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 163  Q
    ||||||| ||| |||||||||||||||||| ||| | | |||||||||| | | ||||||||||||    
T  44327969 aaagacaatgattattttaaaatattaataaaattatgaactaatttgataatcacttacaaagat 44327904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33940071 - 33940027
Alignment:
Q  1 tttcaaaatagtctctgtcttgatcaaaagtttctcaattaagtc 45  Q
    ||||||||||||| |||| ||  ||||||||||||||||||||||    
T  33940071 tttcaaaatagtcactgtttttttcaaaagtttctcaattaagtc 33940027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 39643166 - 39643356
Alignment:
Q  1 tttcaaaatagtctctgtcttgatcaaaagtttctcaattaag--tcttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgata 98  Q
    |||||||||||| | |||||   ||||||||||||| ||||||  | | |||||| |||||||||||| |||||   |||||||||| |||||||||| |    
T  39643166 tttcaaaatagtatatgtctctgtcaaaagtttctcgattaagcgtatcgtcatgtgacaaaaacatagagacataaatctaattgaaaaacttttgaca 39643265  T
Q  99 aagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgactta-----caaagatcaatttggtggtttactctat 184  Q
    || ||| |||||||||| |||||||||| || ||  ||| ||||||||||||||||||     ||| || ||| |||||||||||||||||    
T  39643266 aaaacaatgactattttgaaatattaatggagtcgtggattaatttgagagtgacttataagacaatgaccaaattggtggtttactctat 39643356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 36184729 - 36184813
Alignment:
Q  78 ctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||||| |||||||||| |||||||||||||||||| ||||| ||||||| | |  ||||||||||||||||| |||||||||    
T  36184729 ctaattgaaaaacttttgacaaagacagtgactattttgaaatactaatagagttagagactaatttgagagtgatttacaaaga 36184813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 33391453 - 33391591
Alignment:
Q  26 aaaagtttctcaattaagtc--ttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatatt 123  Q
    |||||||||||||||| |||  |||||||| ||  |||||||||||||| ||| | ||||||||||||||||||||||| || ||||| ||| ||||| |    
T  33391453 aaaagtttctcaattatgtcccttgtcatgtgaataaaacataaagacattgaccaaattgagaaacttttgataaagatagggactaatttgaaatact 33391552  T
Q  124 aatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||  |    ||||||||||| | |||||||||||||    
T  33391553 aatagtttttgagactaatttgataatgacttacaaaga 33391591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 9900340 - 9900233
Alignment:
Q  24 tcaaaagtttctcaattaagtc--ttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaata 121  Q
    |||||| |||||||||||| ||  ||| |||| |||||||||||| | |||| |||||||||||||||||||||| ||||| |   | ||||||||||||    
T  9900340 tcaaaaatttctcaattaaatcccttgacatgtgacaaaaacatagatacaaagatctaattgagaaacttttgacaaagataaaaattattttaaaata 9900241  T
Q  122 ttaataga 129  Q
    ||||||||    
T  9900240 ttaataga 9900233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 148
Target Start/End: Original strand, 8285232 - 8285301
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgaga 148  Q
    |||||||||||||||||| ||||| |  ||||||||||||||||||||| | ||| ||||||||||||||    
T  8285232 taattgagaaacttttgacaaagatatagactattttaaaatattaatatagtcagggactaatttgaga 8285301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 31066075 - 31066159
Alignment:
Q  79 taattgagaaac-ttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||||||||  ||||||||||||||| ||||||||||||||||||||||| ||  || ||||||| ||| | |||||||||||    
T  31066075 taattgagaaaaattttgataaagacagagactattttaaaatattaatagagtcgggggctaatttaagaatcacttacaaaga 31066159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 9637747 - 9637829
Alignment:
Q  77 tctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||||||||||||||||| ||||||| |||| |||||||||   ||||||| | | |||||||||||||| | |||||||||||    
T  9637747 tctaattgagaaacttttgacaaagacattgaccattttaaaa---taatagagttagggactaatttgagaatcacttacaaaga 9637829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 162
Target Start/End: Complemental strand, 11275747 - 11275660
Alignment:
Q  75 gatctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||| ||||||||||||||||| |||||||  ||||| || |||||||||||| ||||| |||||||||| ||| |||  ||||||||    
T  11275747 gatcaaattgagaaacttttgacaaagacaaagactagttgaaaatattaataaaatcatggactaattttagaatgatctacaaaga 11275660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 31066112 - 31066010
Alignment:
Q  5 aaaatagtctctgtcttgatcaaaa-gtttctcaattaagtctt--gtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaag 101  Q
    ||||||||||||||||| |||||||  |||||||||||||||||  ||||||||| ||||||||| | |||  | | |||| ||||||||||||| ||||    
T  31066112 aaaatagtctctgtctttatcaaaatttttctcaattaagtctttcgtcatgcgaaaaaaacatagaaacataggtttaatggagaaacttttgacaaag 31066013  T
Q  102 aca 104  Q
    |||    
T  31066012 aca 31066010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 31065931 - 31065881
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaataga 129  Q
    |||||||||||||||||| ||||||| |||||||||| |||||||||||||    
T  31065931 taattgagaaacttttgacaaagacaatgactattttgaaatattaataga 31065881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 39643078 - 39643163
Alignment:
Q  16 tgtcttgatcaaaagtttctcaattaagtctt--gtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataa 99  Q
    |||||| ||||||||||| |||||||||||||  |||||| |||||||||||| ||||   ||| ||||||||||| |||||||||    
T  39643078 tgtctttatcaaaagtttatcaattaagtctttcgtcatgtgacaaaaacatagagacggagatttaattgagaaatttttgataa 39643163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 5971885 - 5971966
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 160  Q
    ||||||||||| |||||| ||||||| |||||| ||||||||||||||||| ||   ||||||| ||| | |||||||||||    
T  5971885 taattgagaaagttttgacaaagacaatgactagtttaaaatattaatagagtctgagactaatctgaaaatgacttacaaa 5971966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 163
Target Start/End: Original strand, 20399000 - 20399084
Alignment:
Q  78 ctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 163  Q
    |||||||||||| |||| | |||||||  ||||| ||| ||||||||||||| ||| |||||||||||||| || |||||||||||    
T  20399000 ctaattgagaaattttt-acaaagacaaggactaatttgaaatattaatagagtcagggactaatttgagaatgtcttacaaagat 20399084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 8285187 - 8285028
Alignment:
Q  5 aaaatagtctctgtcttgatcaaaagtttctcaattaagtcttg--tcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaaga 102  Q
    |||||||||| |||| |  ||||||||||||||||||| | ||   ||||| ||| |||||||| | |||  ||  |||||||||||||||||| |||||    
T  8285187 aaaatagtctttgtcattgtcaaaagtttctcaattaactgtttgatcatgtgactaaaacatagacacatggacttaattgagaaacttttgacaaaga 8285088  T
Q  103 cagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||    |||||||||||||||||||| |||  |||||| || | | | |||||||||||    
T  8285087 cagaacttattttaaaatattaatagagtcatagactaaattaaaaatcacttacaaaga 8285028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 8840016 - 8840083
Alignment:
Q  81 attgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgaga 148  Q
    ||||| |||||||||| |||||||| ||||||||| ||||||||||||| ||  |||||||| |||||    
T  8840016 attgaaaaacttttgacaaagacagggactattttgaaatattaatagagtcggggactaatctgaga 8840083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 39643103 - 39643020
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    ||||||| ||||||||||||||||||   |  ||||||||||||||||||| |||   |||||||| ||||| |||||||||||    
T  39643103 taattgataaacttttgataaagacaagaagcattttaaaatattaatagagtcataaactaattttagagtaacttacaaaga 39643020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 127
Target Start/End: Complemental strand, 4902300 - 4902222
Alignment:
Q  49 tcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatattaata 127  Q
    ||||| |||||||||||||||| |   | ||||||||||||||||||  ||||| || ||||| |||||||||||||||    
T  4902300 tcatgtgacaaaaacataaagatataaacctaattgagaaacttttggcaaagatagggactaatttaaaatattaata 4902222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 9637706 - 9637652
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatca 133  Q
    ||||||| ||| || ||| |||||||| |||||||||||||||||||||||||||    
T  9637706 taattgaaaaatttatgacaaagacagagactattttaaaatattaatagaatca 9637652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 11243337 - 11243256
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 163  Q
    ||||||||||||||||   |||||||  ||||||||||||||||||||| ||||   ||||||||||| ||||| ||| ||||||    
T  11243337 taattgagaaactttttgcaaagacaaggactattttaaaatattaatataatc---gactaatttgaaagtgatttataaagat 11243256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 33676631 - 33676577
Alignment:
Q  74 tgatctaattgagaaa-cttttgataaagacagtgactattttaaaatattaata 127  Q
    |||||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||    
T  33676631 tgatctaattgaaaaaacttttgataaaaacagtgattattttaaaatattaata 33676577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 11275711 - 11275865
Alignment:
Q  9 tagtctctgtcttgatcaaaagtttctcaattaagtc--ttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagt 106  Q
    |||||| ||||||  |||||||||||||||||   ||  | ||| || ||||||||||||||||||  || || || || |||||||||| ||| | ||     
T  11275711 tagtctttgtctttgtcaaaagtttctcaatttgatccctagtcgtgtgacaaaaacataaagacagagacctgat-gaaaaacttttgacaaatataga 11275809  T
Q  107 gactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
     |||| ||||||||||||||| | |||  ||||||||||||| ||| |||||||||    
T  11275810 aactaatttaaaatattaataaagtcagagactaatttgagaatgatttacaaaga 11275865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 31051195 - 31051279
Alignment:
Q  79 taattgagaaa-cttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    ||||||||||| ||||||| |||  ||| |||||||||||||||||| |||| ||  || ||||||||||| | |||||||||||    
T  31051195 taattgagaaaacttttgacaaaagcagagactattttaaaatattagtagagtcgggggctaatttgagaatcacttacaaaga 31051279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 33090674 - 33090722
Alignment:
Q  56 acaaaaacataaagacaatgatctaattgagaaacttttgataaagaca 104  Q
    ||||||| |||||||||||||||||| | |||||| |||||||||||||    
T  33090674 acaaaaatataaagacaatgatctaacttagaaacgtttgataaagaca 33090722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 158
Target Start/End: Complemental strand, 36184601 - 36184522
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttaca 158  Q
    ||||||||||| |||||| | ||| | ||| |||||| ||||||||||| | | |  |||||||||||||||||||||||    
T  36184601 taattgagaaatttttgacatagataatgattattttgaaatattaataaagttatagactaatttgagagtgacttaca 36184522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 987300 - 987373
Alignment:
Q  82 ttgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgactta 156  Q
    |||| |||||||||||||||| | |||  | ||||||||||||||||| | |  |||||||||||||||||||||    
T  987300 ttgataaacttttgataaagata-tgatcaatttaaaatattaatagagttatagactaatttgagagtgactta 987373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 3620904 - 3620981
Alignment:
Q  48 gtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatattaa 125  Q
    |||||| ||| ||||||||||||||  || |||||||| |||||||||||||| || | ||||| |||  ||||||||    
T  3620904 gtcatgtgaccaaaacataaagacagagacctaattgaaaaacttttgataaaaactgagactagtttgtaatattaa 3620981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 31046134 - 31046218
Alignment:
Q  79 taattgagaaa-cttttgataaagacagtgactattttaaaatattaatagaatc-aaggactaatttgagagtgacttacaaaga 162  Q
    ||||||||||| ||||||| |||| ||  ||||||||||||||||||||||| ||  |||| |||||||||| | |||||||||||    
T  31046134 taattgagaaaacttttgacaaaggcatagactattttaaaatattaatagagtcggagga-taatttgagaatcacttacaaaga 31046218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 5971902 - 5971795
Alignment:
Q  24 tcaaaagtttctcaattaagtc--ttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaata 121  Q
    |||||| ||||||||||||| |  |||| ||| ||||||||||||||||||  ||  ||||| | |||||||||| ||| ||| | | || ||| |||||    
T  5971902 tcaaaactttctcaattaagccatttgttatgtgacaaaaacataaagacatagacttaattcaaaaacttttgacaaaaacaattattaatttgaaata 5971803  T
Q  122 ttaataga 129  Q
    ||||||||    
T  5971802 ttaataga 5971795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27354557 - 27354513
Alignment:
Q  1 tttcaaaatagtctctgtcttgatcaaaagtttctcaattaagtc 45  Q
    |||||||||||||||| |||| |||||| |||||| |||||||||    
T  27354557 tttcaaaatagtctctctctttatcaaatgtttcttaattaagtc 27354513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 27354517 - 27354601
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 163  Q
    ||||| |||||| ||||||||||| || ||||||||| |||||| |||||| |||  |||  |||||| | | ||||||||||||    
T  27354517 taattaagaaacatttgataaagagagagactattttgaaatatgaatagagtcatagacagatttgaaaatcacttacaaagat 27354601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 31051052 - 31050988
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatt 143  Q
    |||||||||||||||||| ||||||   ||||||||| |||||||| |||| |||  ||||||||    
T  31051052 taattgagaaacttttgacaaagacgaggactattttgaaatattagtagagtcagagactaatt 31050988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 29504885 - 29504774
Alignment:
Q  48 gtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgag 147  Q
    |||||| ||||||| |||||||||| ||| |||||||| |||||||| ||||||||| |||||| |||||||||||| |||| | | |||||||||||||    
T  29504885 gtcatgtgacaaaagcataaagacattgacctaattgaaaaacttttaataaagacaatgactagtttaaaatattattagagttatggactaatttgag 29504786  T
Q  148 agtgacttacaa 159  Q
    | ||| ||||||    
T  29504785 aatgaattacaa 29504774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 20124158 - 20124320
Alignment:
Q  1 tttcaaaatagtctctgtcttgatcaaaagtttctcaattaagt--cttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgata 98  Q
    ||||||||||||||||||| |  ||||||| || || |||||||  || || | | |||||||||||| |||||  ||||||||||| |||||||||| |    
T  20124158 tttcaaaatagtctctgtccttgtcaaaagcttttcgattaagtatctcgttaggtgacaaaaacatagagacatggatctaattgaaaaacttttgaca 20124257  T
Q  99 aagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    || ||| |||||||||| ||||||| ||||| |||  ||||||||||| | |||||||||||||    
T  20124258 aaaacaatgactattttgaaatattgatagagtcagagactaatttga-aatgacttacaaaga 20124320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 33429113 - 33429197
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 163  Q
    ||||||| |||||||||||||||| | ||| |||||||||||||||||||| |  | ||||||||||| ||||||||||||||||    
T  33429113 taattgaaaaacttttgataaagatattgattattttaaaatattaatagagttgatgactaatttgaaagtgacttacaaagat 33429197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 78 - 181
Target Start/End: Complemental strand, 40472916 - 40472813
Alignment:
Q  78 ctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagatcaatttggtggttt 177  Q
    ||||| ||||||||||||| ||||| |   |||| |||||||| |||||||| |||| ||||||||||||||| |||||||||||  |||||| ||||||    
T  40472916 ctaatcgagaaacttttgacaaagaaataaactagtttaaaattttaatagagtcaaagactaatttgagagtaacttacaaagactaatttgctggttt 40472817  T
Q  178 actc 181  Q
    ||||    
T  40472816 actc 40472813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 55447176 - 55447259
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||| ||| |||  |||| |||||||| | |||||||||||    
T  55447176 taattgagaaacttttgagaaagacagagactattttaaaatattaagagagtcagagactgatttgagaatcacttacaaaga 55447259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 38181459 - 38181385
Alignment:
Q  55 gacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatattaataga 129  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||  | ||||| ||| |||||||||||||    
T  38181459 gacaaaaacataaagataatgatcaaattgagaaacttttgataaagatggagactagtttgaaatattaataga 38181385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 39840742 - 39840661
Alignment:
Q  81 attgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||||||||||||| ||| ||| |||||||||| ||||||||||||| |||  ||||||||||||| | |||||||||||    
T  39840742 attgagaaacttttgacaaaaacaatgactattttgaaatattaatagagtcagagactaatttgagaatcacttacaaaga 39840661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 45965815 - 45965675
Alignment:
Q  24 tcaaaagtttctcaattaagtc--ttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaata 121  Q
    |||||||||||||||||| |||  |||||||   ||||||||||||||| |  ||  ||||||||||  |||| | |||||||  |||||| || |||||    
T  45965815 tcaaaagtttctcaattaggtcctttgtcatataacaaaaacataaagatatggacataattgagaattttttaacaaagacaaggactatattgaaata 45965716  T
Q  122 ttaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    ||||||||||||  || ||||||||||| ||||||||||||    
T  45965715 ttaatagaatcagagattaatttgagagcgacttacaaaga 45965675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 55 - 158
Target Start/End: Original strand, 1431440 - 1431542
Alignment:
Q  55 gacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgact 154  Q
    ||||||||||||| || || ||||||| ||| |||  ||||| |||||||||||||| ||| | |||||||||||||  ||||||||||||||||||| |    
T  1431440 gacaaaaacataa-gaaaaagatctaactgaaaaatgtttgacaaagacagtgactaatttgagatattaatagaattgaggactaatttgagagtgaat 1431538  T
Q  155 taca 158  Q
    ||||    
T  1431539 taca 1431542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 20124078 - 20124152
Alignment:
Q  24 tcaaaagtttctcaattaagtctt--gtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttga 96  Q
    |||||||||||||||||||||||   ||||||  |||||||||| |||||||||||||| |||||||||||||||    
T  20124078 tcaaaagtttctcaattaagtctctcgtcatgtaacaaaaacatcaagacaatgatctagttgagaaacttttga 20124152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 45965797 - 45965879
Alignment:
Q  78 ctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 160  Q
    ||||||||||||||||||| ||||| | | |||| ||| ||||||||||||| |||   ||||||||||||||||||||||||    
T  45965797 ctaattgagaaacttttgaaaaagataataactagtttgaaatattaatagagtcacaaactaatttgagagtgacttacaaa 45965879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 28860558 - 28860665
Alignment:
Q  24 tcaaaagtttctcaattaagtctt--gtcatgcgacaaaaacataaa-gacaatgatctaattgagaaacttttgataaagacagtgactattttaaaat 120  Q
    |||||| ||||||||||| ||| |  |||||| |||||||||||||| || ||||||||||||||||||||||||| ||| | || ||||| ||| ||||    
T  28860558 tcaaaaatttctcaattaggtcattcgtcatgggacaaaaacataaaagataatgatctaattgagaaacttttgacaaa-aaagagactagtttgaaat 28860656  T
Q  121 attaataga 129  Q
    |||||||||    
T  28860657 attaataga 28860665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 48338396 - 48338312
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 163  Q
    |||||||||||||||||| |||||||  ||||||||| || |||||||||| |||| ||||||||| ||| | | ||||||||||    
T  48338396 taattgagaaacttttgacaaagacatggactattttgaagtattaatagagtcaatgactaatttaagaatcatttacaaagat 48338312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 11413149 - 11413247
Alignment:
Q  25 caaaagtttctcaattaagtc--ttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaata 121  Q
    ||||||||||||||||||| |  | |||||| || |||||||| ||||||| ||||||||||||||||||||||  ||||||   |||||||| |||||    
T  11413149 caaaagtttctcaattaagcccctcgtcatgtgataaaaacattaagacaaagatctaattgagaaacttttgactaagacaaatactattttgaaata 11413247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 16298277 - 16298194
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||||||| | ||||| ||| |||| || |||||||||||||||||| | ||  |||||| |||||||||||||||||||||    
T  16298277 taattgagaatcatttgacaaacacagagattattttaaaatattaataaagtcgtggactagtttgagagtgacttacaaaga 16298194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 33075263 - 33075346
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    ||||||| ||| |||||| ||| ||| |||||| ||||||||||||||||| | || || |||||||||||||||||| |||||    
T  33075263 taattgataaatttttgacaaaaacaatgactaatttaaaatattaatagatttaatgattaatttgagagtgacttataaaga 33075346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 27812296 - 27812380
Alignment:
Q  78 ctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    ||||||||||||||||| | |||||||  ||||||||| ||||| ||||||| ||| |||||||||| ||| |  ||||||||||    
T  27812296 ctaattgagaaacttttaacaaagacatagactatttttaaatagtaatagagtcatggactaatttaagaatatcttacaaaga 27812380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 160
Target Start/End: Complemental strand, 28860582 - 28860494
Alignment:
Q  72 aatgatctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 160  Q
    ||||| |||||||||||| |||||| | |||||  || || ||| |||||| |||||| ||| ||| ||||||||||||||||||||||    
T  28860582 aatgacctaattgagaaatttttgacacagacatggagtagtttgaaatatcaatagagtcatggattaatttgagagtgacttacaaa 28860494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 162
Target Start/End: Original strand, 49547695 - 49547779
Alignment:
Q  78 ctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||||||||| ||||||  || ||| | |||| ||| ||||||||||| ||||| ||||||||||||||||||  ||||||||    
T  49547695 ctaattgagaaaattttgactaacacattaactagtttgaaatattaatataatcatggactaatttgagagtgatgtacaaaga 49547779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 55447031 - 55446947
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 163  Q
    ||||||||||| |||| | |||||||  ||||||||| ||||||||||||| ||| ||| |||||||| | | ||||||||||||    
T  55447031 taattgagaaaattttaacaaagacatggactattttgaaatattaatagagtcatggattaatttgacaatcacttacaaagat 55446947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 42045856 - 42045773
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    ||||||| |||||||||| | ||||| |||||||||| ||||||||||||| | | ||| |||||||||  | |||||||||||    
T  42045856 taattgaaaaacttttgacatagacaatgactattttgaaatattaatagagttatggattaatttgaggatcacttacaaaga 42045773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 39840886 - 39840970
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 163  Q
    ||||||||||| |||| | ||||| || ||||||||| ||||||||||| | | | | |||||||||||| | ||||||||||||    
T  39840886 taattgagaaaattttaacaaagatagggactattttgaaatattaataaagttaggaactaatttgagaatcacttacaaagat 39840970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 162
Target Start/End: Original strand, 40472931 - 40473037
Alignment:
Q  55 gacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgact 154  Q
    ||||||||||||||||||   | ||||||||||||||||||| ||| | |   |||| ||||||||||||||||| ||  |||||||||| ||| ||||     
T  40472931 gacaaaaacataaagacatatacctaattgagaaacttttgacaaaaataaatactaatttaaaatattaatagactc-gggactaatttaagaatgaca 40473029  T
Q  155 tacaaaga 162  Q
    || |||||    
T  40473030 tataaaga 40473037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 47337316 - 47337242
Alignment:
Q  24 tcaaaagtttctcaattaagtc--ttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttga 96  Q
    ||||||||||||||||||||||  | || ||  |||||||||||| |||||  ||||||||||| ||||||||||    
T  47337316 tcaaaagtttctcaattaagtccctcgttatatgacaaaaacatagagacagggatctaattgaaaaacttttga 47337242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 1163470 - 1163420
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaataga 129  Q
    |||||||||||||||||| ||| |||   ||||||||||||||||||||||    
T  1163470 taattgagaaacttttgacaaacacataaactattttaaaatattaataga 1163420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 33429136 - 33429056
Alignment:
Q  18 tcttgatcaaaagtttctcaattaagtctt--gtcatgcgacaaaaacataaagacaatg-atctaattgagaaacttttga 96  Q
    |||| ||||||||||| |||||||||||||  |||||| |||||||||| | ||| |||| ||||||||||||||| |||||    
T  33429136 tctttatcaaaagtttttcaattaagtctttcgtcatgtgacaaaaacaaagaga-aatgaatctaattgagaaacatttga 33429056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 134
Target Start/End: Original strand, 42045897 - 42045951
Alignment:
Q  80 aattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaa 134  Q
    |||||| |||||||||| |||||||   |||||||| ||||||||||||||||||    
T  42045897 aattgaaaaacttttgacaaagacatatactattttgaaatattaatagaatcaa 42045951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 33428993 - 33428921
Alignment:
Q  56 acaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatattaataga 129  Q
    ||||||||||| ||| || ||| |||||||||||||||||| ||||| |   |||||||| |||||||||||||    
T  33428993 acaaaaacatagagagaa-gatttaattgagaaacttttgacaaagatatgaactattttgaaatattaataga 33428921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 46164083 - 46164148
Alignment:
Q  83 tgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgaga 148  Q
    |||||||| ||||| |||||||| ||| ||||| |  |||||||||| ||| ||||||||||||||    
T  46164083 tgagaaacgtttgacaaagacagagaccattttgagttattaatagagtcagggactaatttgaga 46164148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 55447212 - 55447175
Alignment:
Q  5 aaaatagtctctgtcttgatcaaaagtttctcaattaa 42  Q
    |||||||||||||||||  |||||||||||||||||||    
T  55447212 aaaatagtctctgtctttctcaaaagtttctcaattaa 55447175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 31578677 - 31578605
Alignment:
Q  55 gacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatattaata 127  Q
    |||||||||||||||| ||  |  ||| ||| |||| ||| ||||| |||| |||||||||||||||||||||    
T  31578677 gacaaaaacataaagataagaacataaatgaaaaacatttcataaaaacagagactattttaaaatattaata 31578605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 47337322 - 47337374
Alignment:
Q  108 actattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 160  Q
    |||||||| || |||||||||| ||| | ||||||||||||||||||| ||||    
T  47337322 actattttgaattattaatagagtcaggaactaatttgagagtgactttcaaa 47337374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 49547640 - 49547592
Alignment:
Q  112 ttttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 160  Q
    |||||||||||||||||| |||| || |||||||||| ||| |||||||    
T  49547640 ttttaaaatattaatagagtcaatgattaatttgagaatgatttacaaa 49547592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 51862693 - 51862748
Alignment:
Q  107 gactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 163  Q
    ||||||||||||||||||||||| || ||||||||||||| | | | ||||||||||    
T  51862693 gactattttaaaatattaatagagtc-aggactaatttgaaaatcatttacaaagat 51862748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 5 - 163
Target Start/End: Complemental strand, 11034 - 10874
Alignment:
Q  5 aaaatagtctctgtcttgatcaaaagtttctcaattaagtctt--gtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaaga 102  Q
    |||||||||| |||||| ||||||||||| ||||||||||||   ||| || || ||||||||| | |||   || |||||||||||||||||| |||||    
T  11034 aaaatagtctttgtctttatcaaaagtttttcaattaagtctctcgtcgtgtgaaaaaaacatagaaacataaatttaattgagaaacttttgacaaaga 10935  T
Q  103 cagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 163  Q
     |   |||||||||||||||||||| |||||  |||||||| |||| | ||||| ||||||    
T  10934 tataaactattttaaaatattaataaaatcatagactaattagagaatcacttaaaaagat 10874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 79 - 162
Target Start/End: Original strand, 10998 - 11081
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    ||||||| ||||||||||||||||||  ||||||||||| ||||||||| | ||| |||||||||||||| | |||||| ||||    
T  10998 taattgaaaaacttttgataaagacaaagactattttaagatattaataaattcatggactaatttgagaatcacttaccaaga 11081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 3e-19; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 19121955 - 19122063
Alignment:
Q  55 gacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgact 154  Q
    |||||||||||||  ||||| ||||||||||||||||| | | |||||||   |||| ||| ||||||||||||| |||  ||||||||||| |||||||    
T  19121955 gacaaaaacataacaacaataatctaattgagaaacttctaacaaagacataaactagtttgaaatattaatagagtcatagactaatttgaaagtgact 19122054  T
Q  155 tacaaagat 163  Q
    |||||||||    
T  19122055 tacaaagat 19122063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 17437699 - 17437808
Alignment:
Q  55 gacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgacta-ttttaaaatattaatagaatcaaggactaatttgagagtgac 153  Q
    |||||||||||| |||||| |||||||||||||||||||| | ||||||||  |||| |||| ||||||||||||| | |  ||||| ||| |||||||     
T  17437699 gacaaaaacatagagacaaagatctaattgagaaacttttaacaaagacagaaactatttttgaaatattaatagagtaatagactatttttagagtgaa 17437798  T
Q  154 ttacaaagat 163  Q
    ||||||||||    
T  17437799 ttacaaagat 17437808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 21394430 - 21394566
Alignment:
Q  26 aaaagtttctcaattaagt--cttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatatt 123  Q
    |||||||||||||||||||  || |||||| || ||||||||| ||| |  ||||||||||||||||| |||| ||||| || |  ||||||  ||||||    
T  21394430 aaaagtttctcaattaagtacctcgtcatgtgataaaaacatagaga-agggatctaattgagaaactattgacaaagatagaggttatttttcaatatt 21394528  T
Q  124 aatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||| | ||  ||||||||||||||||||||||||||||    
T  21394529 aataaagtcg-ggactaatttgagagtgacttacaaaga 21394566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 5656510 - 5656620
Alignment:
Q  16 tgtcttgatcaaaagtttctcaattaagtc--ttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactatt 113  Q
    |||||| ||||||||||| ||| ||| |||  | ||||||||||| |||||||||   || || ||||||||||||||||| | |||||||| ||||| |    
T  5656510 tgtctttatcaaaagtttttcatttaggtccctcgtcatgcgacagaaacataaa---aaagacctaattgagaaacttttaacaaagacagagactagt 5656606  T
Q  114 ttaaaatattaata 127  Q
    ||||||||||||||    
T  5656607 ttaaaatattaata 5656620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 26330291 - 26330227
Alignment:
Q  58 aaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatat 122  Q
    ||||||||| | |||  |||||||||||||||||||||| ||||||| |||||||||||||||||    
T  26330291 aaaaacatagaaacatggatctaattgagaaacttttgacaaagacattgactattttaaaatat 26330227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 32520100 - 32520207
Alignment:
Q  24 tcaaaagtttctcaattaagt--cttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaata 121  Q
    |||||||||| ||||||||||  || |||||| |||||||| | ||||| || ||| ||||||| ||||| ||||| || |||  |||||||||||||||    
T  32520100 tcaaaagtttttcaattaagtgtctcgtcatgtgacaaaaatacaaagataaagatttaattgacaaactgttgattaaaacatagactattttaaaata 32520199  T
Q  122 ttaataga 129  Q
    ||||||||    
T  32520200 ttaataga 32520207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 8447028 - 8446961
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttga 146  Q
    ||||||| |||||||| | ||||||| |||||||||| |||||||||||||||||  |||||||||||    
T  8447028 taattgaaaaacttttaacaaagacattgactattttgaaatattaatagaatcagtgactaatttga 8446961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 8455832 - 8455765
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttga 146  Q
    ||||||| |||||||| | ||||||| |||||||||| |||||||||||||||||  |||||||||||    
T  8455832 taattgaaaaacttttaacaaagacattgactattttgaaatattaatagaatcagtgactaatttga 8455765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 21394311 - 21394256
Alignment:
Q  107 gactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    ||||||||||||||||||||||| | || |||||||||||||||| ||||||||||    
T  21394311 gactattttaaaatattaatagagttaatgactaatttgagagtggcttacaaaga 21394256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 146
Target Start/End: Complemental strand, 21969228 - 21969161
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttga 146  Q
    ||||||||||||||||||||||||||| |  |||||||||||||||||||| |||  ||||| |||||    
T  21969228 taattgagaaacttttgataaagacagagtttattttaaaatattaatagagtcagtgactattttga 21969161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 23765923 - 23765853
Alignment:
Q  24 tcaaaagtttctcaattaagtc--ttgtcatgcgacaaaaacataaagacaatgatctaattgagaaactt 92  Q
    |||||| |||||||||||||||  || ||||| |||||||||||||||||||||| |||||||| ||||||    
T  23765923 tcaaaaatttctcaattaagtcccttatcatgtgacaaaaacataaagacaatgacctaattgaaaaactt 23765853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 162
Target Start/End: Original strand, 3960816 - 3960929
Alignment:
Q  49 tcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgaga 148  Q
    ||||| ||||||||||| ||||||   | ||||| ||||||||||||| ||| |||  ||||| ||||||||||||||||| |||  ||||| ||||| |    
T  3960816 tcatgtgacaaaaacatgaagacagaaacctaatcgagaaacttttgacaaacacaaggactaatttaaaatattaatagagtcatagactagtttgata 3960915  T
Q  149 gtgacttacaaaga 162  Q
     | |||||||||||    
T  3960916 ataacttacaaaga 3960929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 104
Target Start/End: Original strand, 17333397 - 17333442
Alignment:
Q  59 aaaacataaagacaatgatctaattgagaaacttttgataaagaca 104  Q
    ||||||||||||||  |||||||||||||||||||||| |||||||    
T  17333397 aaaacataaagacagagatctaattgagaaacttttgacaaagaca 17333442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 26330310 - 26330391
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 160  Q
    ||||||| |||  ||||| |||||||   |||||||||||||||||||||| |||| ||||||||||| | | |||||||||    
T  26330310 taattgataaatctttgacaaagacaacaactattttaaaatattaatagagtcaatgactaatttgataatcacttacaaa 26330391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 19121940 - 19121856
Alignment:
Q  78 ctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||| |||| ||||||| ||||| ||  |||| ||||||||||||||||| | |  ||||| |||||||||| ||||||||||    
T  19121940 ctaatttagaagcttttgacaaagatagaaactagtttaaaatattaatagagttagcgactagtttgagagtggcttacaaaga 19121856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 16710491 - 16710444
Alignment:
Q  108 actattttaaaatattaatagaatcaaggactaatttgagagtgactt 155  Q
    |||||||||||||||||||||| |||| | ||||||||| ||||||||    
T  16710491 actattttaaaatattaatagagtcaaagtctaatttgaaagtgactt 16710444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 17437610 - 17437527
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    ||||||||||||||||||||||||||  |||||  || | ||||||||||| ||| | |||||||| | ||| || ||||||||    
T  17437610 taattgagaaacttttgataaagacaaagactaaattgatatattaatagagtcatgaactaatttaatagtaacatacaaaga 17437527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 32942389 - 32942440
Alignment:
Q  78 ctaattgagaaacttttgataaagacagtgactattttaaaatattaataga 129  Q
    |||||||||||||||| ||||||||||  ||| || ||||||||||||||||    
T  32942389 ctaattgagaaactttcgataaagacatagaccatattaaaatattaataga 32942440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 21969298 - 21969352
Alignment:
Q  109 ctattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 163  Q
    |||||||||||||||||| || |||  ||||||||||||| | ||||||||||||    
T  21969298 ctattttaaaatattaattgagtcagagactaatttgagattcacttacaaagat 21969352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 17333379 - 17333311
Alignment:
Q  78 ctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgag 147  Q
    |||||||||| |||||||| |||||| | | ||| ||| ||||||||||||| ||| |||||||||||||    
T  17333379 ctaattgagatacttttgacaaagac-gaggctagtttgaaatattaatagagtcagggactaatttgag 17333311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 163
Target Start/End: Complemental strand, 22017861 - 22017796
Alignment:
Q  98 aaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaagat 163  Q
    ||||||| ||| |||||||||||||||||| ||| | | |||||||||| | | ||||||||||||    
T  22017861 aaagacaatgattattttaaaatattaataaaattatgaactaatttgataatcacttacaaagat 22017796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 21969200 - 21969232
Alignment:
Q  13 ctctgtcttgatcaaaagtttctcaattaagtc 45  Q
    ||||||||| |||||||||||||||||||||||    
T  21969200 ctctgtctttatcaaaagtttctcaattaagtc 21969232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 146
Target Start/End: Original strand, 22714330 - 22714398
Alignment:
Q  78 ctaattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttga 146  Q
    |||||| | |||||||||||||||||||  |||| ||| |||||| |||||||||   |||||||||||    
T  22714330 ctaattaaaaaacttttgataaagacagaaactagtttgaaatatgaatagaatcggtgactaatttga 22714398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 160
Target Start/End: Original strand, 6214 - 6295
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 160  Q
    |||||||||||||||| | |||| ||   |||||||| ||||||||||||| |||| ||||||||||||| | |||||||||    
T  6214 taattgagaaacttttaacaaaggcaaaaactattttgaaatattaatagagtcaaagactaatttgagaataacttacaaa 6295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 6134 - 6173
Alignment:
Q  2 ttcaaaatagtctctgtcttgatcaaaagtttctcaatta 41  Q
    ||||||||||||||||||||  ||||||||||||||||||    
T  6134 ttcaaaatagtctctgtctttgtcaaaagtttctcaatta 6173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Complemental strand, 6175 - 6137
Alignment:
Q  77 tctaattgagaaacttttgataaagacagtgactatttt 115  Q
    |||||||||||||||||||| |||||||| |||||||||    
T  6175 tctaattgagaaacttttgacaaagacagagactatttt 6137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 160
Target Start/End: Complemental strand, 12069 - 11992
Alignment:
Q  83 tgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 160  Q
    ||||||||||||||||||| ||   |||||||||||||||||||| ||| ||  || ||||||||||| |||||||||    
T  12069 tgagaaacttttgataaaggcaaaaactattttaaaatattaataaaattaaaaacaaatttgagagtaacttacaaa 11992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 91 - 160
Target Start/End: Original strand, 12119 - 12186
Alignment:
Q  91 ttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaa 160  Q
    |||||| ||| | |||||||||||||||||||||||| ||| ||||| ||||||  ||||||||||||||    
T  12119 ttttgacaaaaatagtgactattttaaaatattaatacaatgaaggattaattt--gagtgacttacaaa 12186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 82103 - 81970
Alignment:
Q  27 aaagtttctcaattaagt--cttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaatatta 124  Q
    ||||||| ||||||||||  ||||||||| || ||||||||| |||    ||||||||||| |||||||||  ||||| |   | |||||  ||||||||    
T  82103 aaagtttttcaattaagtgtcttgtcatgtgataaaaacatagagatg--gatctaattgataaacttttggcaaagatatgaattatttggaaatatta 82006  T
Q  125 atagaatcaaggactaatttgagagtgacttacaaa 160  Q
    ||||| |||| |||||||||||||||| ||||||||    
T  82005 atagagtcaatgactaatttgagagtgtcttacaaa 81970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 82205 - 82128
Alignment:
Q  24 tcaaaagtttctcaattaagtctt-----gtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttga 96  Q
    |||||||||| | |||||||||||     |||||| |||||||| ||  |||||||||||||||||||||||||||||    
T  82205 tcaaaagttttttaattaagtctttcgtcgtcatgtgacaaaaaaattgagacaatgatctaattgagaaacttttga 82128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 4795 - 4850
Alignment:
Q  107 gactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||||||||||||||||||||||||  ||||||||||||| | | |||||||||    
T  4795 gactattttaaaatattaatagaatcagagactaatttgagaataatttacaaaga 4850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 11542 - 11588
Alignment:
Q  116 aaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    ||||||||||| || ||| ||||||||||||||||||||||||||||    
T  11542 aaaatattaattgagtcatggactaatttgagagtgacttacaaaga 11588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 162
Target Start/End: Original strand, 11907 - 11953
Alignment:
Q  116 aaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    ||||||||||| || ||| ||||||||||||||||||||||||||||    
T  11907 aaaatattaattgagtcatggactaatttgagagtgacttacaaaga 11953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0198; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 12110 - 12214
Alignment:
Q  24 tcaaaagtttctcaattaa--gtcttgtcatgcgacaaaaacataaagacaatgatctaattgagaaacttttgataaagacagtgactattttaaaata 121  Q
    |||||||||| ||||||||  ||| | ||| | |||||||||||| | |||   |||||||||| |||| |||||||| ||||  |||||||||||||||    
T  12110 tcaaaagtttttcaattaaatgtcatatcacgtgacaaaaacatagatacatgaatctaattgaaaaacgtttgataaggacaaagactattttaaaata 12209  T
Q  122 ttaat 126  Q
    |||||    
T  12210 ttaat 12214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0137 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 17179 - 17102
Alignment:
Q  85 agaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    |||||| ||||| ||||||||  |||| ||||||||||||||||| |   ||||||||||||||||  ||||||||||    
T  17179 agaaacgtttgacaaagacaggaactagtttaaaatattaatagagtttgggactaatttgagagtatcttacaaaga 17102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0528 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0528
Description:

Target: scaffold0528; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 1746 - 1662
Alignment:
Q  79 taattgagaaa-cttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatttgagagtgacttacaaaga 162  Q
    ||||||||||| ||||||| |||  ||| |||||||||||||||||| |||| ||  || ||||||||||| | |||||||||||    
T  1746 taattgagaaaacttttgacaaaagcagagactattttaaaatattagtagagtcgggggctaatttgagaatcacttacaaaga 1662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0528; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 1889 - 1953
Alignment:
Q  79 taattgagaaacttttgataaagacagtgactattttaaaatattaatagaatcaaggactaatt 143  Q
    |||||||||||||||||| ||||||   ||||||||| |||||||| |||| |||  ||||||||    
T  1889 taattgagaaacttttgacaaagacgaggactattttgaaatattagtagagtcagagactaatt 1953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 125
Target Start/End: Complemental strand, 7628 - 7561
Alignment:
Q  59 aaaacataaagacaatgatctaattgagaaacttttgataaag-acagtgactattttaaaatattaa 125  Q
    |||||||||| ||||||| ||||||||||||||||| | |||| ||| |||||| ||| |||||||||    
T  7628 aaaacataaaaacaatgaactaattgagaaacttttaaaaaagaacaatgactagtttgaaatattaa 7561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University