View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2482_low_2 (Length: 687)
Name: NF2482_low_2
Description: NF2482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2482_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 512
Target Start/End: Original strand, 28831197 - 28831708
Alignment:
| Q |
1 |
gtggaaactgcataagagatgcatgcatttggagcttgtggacaatgccttagaccataatgactatgatggagaagtaaagaaaatgatagagattgct |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28831197 |
gtggaaactgcataagagaggcatgcatttggagcttgtggacaaggccttagaccataatgactatgatggagaagtaaagaaaatgatagagattgct |
28831296 |
T |
|
| Q |
101 |
ttactatgcattcaagcatcagctggaatgagaccaacattgtctgaagtagaagtcctactccaaaccaggagccctgaccatgcagctccagtaacca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28831297 |
ttactatgcattcaagcatcagctggaatgagaccaacattgtctgaagtagaagtcctactccaaaccaggagccctgaccatgtagctccagtaacca |
28831396 |
T |
|
| Q |
201 |
aatttccgatagtaatttgagaaatcataaatgattgtatgtaatcacaagtatcggtgtgcaacaccaacacatgtcatatcagacaggccttcagttt |
300 |
Q |
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| T |
28831397 |
aatttccgatagtaatttgagaaataataaatgattgtatgtaatcacaagtatcggtgtgcaacaccaacacatgtcatatcagacaggccttcagttt |
28831496 |
T |
|
| Q |
301 |
gaaatatcaatgctacgtagattgtttgatcaatttcttgatactcaggcggcctaattccttctctaaccacaacccatcatagcttggttgatcaatt |
400 |
Q |
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| T |
28831497 |
gaaatatcaatgctacatagattgtttgatcaatttcttgatactcaggcgccctaattccttctctaaccacaacccatcatagcttggttgatcaatt |
28831596 |
T |
|
| Q |
401 |
tcatcaaaagttgcattgagtgctttgacctattgtgaccactttcacccaatggatgtaatcatggttggttggtcgtgtctaatgtggtccagacatt |
500 |
Q |
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| T |
28831597 |
tcatcaaaagttgcatcgagtgctttgacctattgtgaccgctttcacctaatggatgtaatcatggttggttggtcgcgtctaatgtggtccagacatt |
28831696 |
T |
|
| Q |
501 |
ggtctatatttg |
512 |
Q |
| |
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|||||||||||| |
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| T |
28831697 |
ggtctatatttg |
28831708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 566 - 687
Target Start/End: Original strand, 28831762 - 28831883
Alignment:
| Q |
566 |
ggttttcagcacatactgaacatatttggattatataacctgaaaccaataacaatttatttctgattatataagtcaaacgtgttcagcacgcnnnnnn |
665 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28831762 |
ggttttcagcacatactgaacatatttggattatataacctgaaaccaatgacaatttaattctgattatataagtcaaacgtgttcagcacgcaaaaaa |
28831861 |
T |
|
| Q |
666 |
nntcaaattagagaacagtaga |
687 |
Q |
| |
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|||||||||||||||||||| |
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|
| T |
28831862 |
aatcaaattagagaacagtaga |
28831883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 2 - 175
Target Start/End: Original strand, 28827270 - 28827446
Alignment:
| Q |
2 |
tggaaactgcataagagatgcatgcatttggagcttgtggacaatgccttagaccataatgactatgatggagaagta---aagaaaatgatagagattg |
98 |
Q |
| |
|
|||||||||||| ||||| ||||||| |||||||| || ||||| | |||||||| ||| |||||||||||||||| | ||||||||||||||||||| |
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| T |
28827270 |
tggaaactgcatgagagaggcatgcacttggagctagtcgacaaggtcttagaccctaacgactatgatggagaagaagtgaagaaaatgatagagattg |
28827369 |
T |
|
| Q |
99 |
ctttactatgcattcaagcatcagctggaatgagaccaacattgtctgaagtagaagtcctactccaaaccaggagc |
175 |
Q |
| |
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|||| | || | ||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||| |
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| T |
28827370 |
ctttgttgtgtactcaagcatcagctggaatgagaccaacgatgtctgaagtagtagtcctcctccaaaccaggagc |
28827446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 2 - 171
Target Start/End: Original strand, 28836609 - 28836781
Alignment:
| Q |
2 |
tggaaactgcataagagatgcatgcatttggagcttgtggacaatgccttagaccataatgactatgatgg---agaagtaaagaaaatgatagagattg |
98 |
Q |
| |
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|||||||||||| ||||| ||||||| |||||||| |||||||| |||||||||| ||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
28836609 |
tggaaactgcatgagagaggcatgcacttggagctcgtggacaaggccttagaccctaatgactatgatggagaagaagtgaagaaaatgatagagattg |
28836708 |
T |
|
| Q |
99 |
ctttactatgcattcaagcatcagctggaatgagaccaacattgtctgaagtagaagtcctactccaaaccag |
171 |
Q |
| |
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|| | | || | |||||||||||||||||||||||||||| |||||||||| | |||||| || |||||||| |
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| T |
28836709 |
ctctgttgtgtactcaagcatcagctggaatgagaccaacaatgtctgaagttgtagtcctccttcaaaccag |
28836781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 7 - 175
Target Start/End: Original strand, 28839247 - 28839415
Alignment:
| Q |
7 |
actgcataagagatgcatgcatttggagcttgtggacaatgccttagaccataatgactatgatggagaa---gtaaagaaaatgatagagattgcttta |
103 |
Q |
| |
|
||||||| ||||| |||||||||||||| | |||||||| | ||| |||| | |||||||| |||||||| || ||||||||||||| |||||||||| |
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| T |
28839247 |
actgcatgagagaggcatgcatttggaggtcgtggacaaggtcttggaccctgatgactataatggagaataagtgaagaaaatgatagtgattgcttta |
28839346 |
T |
|
| Q |
104 |
ctatgcattcaagcatcagctggaatgagaccaacattgtctgaagtagaagtcctactccaaaccaggagc |
175 |
Q |
| |
|
|||| | |||||||||||||||||||| ||||||| |||||||||||| |||| ||||||||||||||| |
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| T |
28839347 |
ttatgtactcaagcatcagctggaatgaaaccaacaatgtctgaagtagtagtc---ctccaaaccaggagc |
28839415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 367 - 422
Target Start/End: Original strand, 28842781 - 28842836
Alignment:
| Q |
367 |
taaccacaacccatcatagcttggttgatcaatttcatcaaaagttgcattgagtg |
422 |
Q |
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| T |
28842781 |
taaccacagcccgtcatagcttgtgtgatcaacttcatcaaaagttgcattgagtg |
28842836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 28842030 - 28842076
Alignment:
| Q |
206 |
ccgatagtaatttgagaaatcataaatgattgtatgtaatcacaagt |
252 |
Q |
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| T |
28842030 |
ccgatggtaatttgagaaaacataagtgattgtatgtaatcacaagt |
28842076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 1466037 - 1465963
Alignment:
| Q |
2 |
tggaaactgcataagagatgcatgcatttggagcttgtggacaatgccttagaccataatgactatgatggagaa |
76 |
Q |
| |
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|||||||||||| ||||| |||||| ||||| ||| |||||||| | ||| |||| | |||||||| |||||||| |
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|
| T |
1466037 |
tggaaactgcatgagagaggcatgcgtttggtgctcgtggacaaggtcttggaccctgatgactataatggagaa |
1465963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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