View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2483_high_14 (Length: 252)
Name: NF2483_high_14
Description: NF2483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2483_high_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 10 - 246
Target Start/End: Complemental strand, 1878155 - 1877919
Alignment:
| Q |
10 |
aagcaaaggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcac |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1878155 |
aagcataggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacgtcactgaattcattgcttgcaatcac |
1878056 |
T |
|
| Q |
110 |
cacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttctatgtgttttaagttctataccttacacaacaatggcaaaccttgttgaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1878055 |
cacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttctatgtgttttaagttctataccttacacaacaatggcaaaccttgttgaa |
1877956 |
T |
|
| Q |
210 |
attcagaatatatggtatatgttcttaatgatgatga |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1877955 |
attcagaatatatggtatatgttcttaatgatgatga |
1877919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 10 - 218
Target Start/End: Complemental strand, 1884167 - 1883959
Alignment:
| Q |
10 |
aagcaaaggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcac |
109 |
Q |
| |
|
||||| |||||||||| |||| |||||||||||||||||||| ||||||||| | ||| | | |||||||| ||| ||||||||| | |||||| |
|
|
| T |
1884167 |
aagcataggcaacaaagacatgattgttcatcccttgaagtgtagctgctttgaacaaagtcagtaaagccatgtcaacacattcattgcctataatcac |
1884068 |
T |
|
| Q |
110 |
cacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttctatgtgttttaagttctataccttacacaacaatggcaaaccttgttgaa |
209 |
Q |
| |
|
||| ||| |||||||||||||||||||||| | ||||||||||||||||||||||| |||||| ||| | || |||||||| |||||||||||||| |
|
|
| T |
1884067 |
aacaggtggcagaaaatccatgtaaaaggaccgttttcttgtcatctttctatgtgttctaagttttatcctatatacaacaatcacaaaccttgttgaa |
1883968 |
T |
|
| Q |
210 |
attcagaat |
218 |
Q |
| |
|
|||||||| |
|
|
| T |
1883967 |
gttcagaat |
1883959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 81
Target Start/End: Complemental strand, 1890811 - 1890740
Alignment:
| Q |
10 |
aagcaaaggcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagcca |
81 |
Q |
| |
|
||||| |||||||||| |||| |||||||||||||||||||||||||||||| | ||| ||| |||||||| |
|
|
| T |
1890811 |
aagcataggcaacaaagacatgattgttcatcccttgaagtgtggctgctttgaacaaagtgagtaaagcca |
1890740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 160
Target Start/End: Complemental strand, 1911094 - 1910967
Alignment:
| Q |
33 |
ttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcaccacaattggtagaaaatccatgt |
132 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | ||| ||| |||||||| ||| | |||||| || | |||||| || ||| |||| |||||||| |
|
|
| T |
1911094 |
ttgttcatcccttgaagtgtagctgctttgaacaaagtgagtaaagccatgtcaatacattcatagcatataatcacagcaggtggcagaacatccatgt |
1910995 |
T |
|
| Q |
133 |
aaaaggaccatcttcttgtcatctttct |
160 |
Q |
| |
|
| |||||||||||||||||||| ||||| |
|
|
| T |
1910994 |
acaaggaccatcttcttgtcatgtttct |
1910967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 1895653 - 1895509
Alignment:
| Q |
18 |
gcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcaccacaattg |
117 |
Q |
| |
|
|||||||| |||| |||||||||||||||| ||||||||||||| | ||| ||| |||||||| ||| | ||| | | | ||||| | ||||| |
|
|
| T |
1895653 |
gcaacaaagacatggttgttcatcccttgatttgtggctgctttgaacaaagtgagtaaagccatttcaatagtttcctgtcctatgatcactaaaattg |
1895554 |
T |
|
| Q |
118 |
gtagaaaatccatgtaaaaggaccatcttcttgtcatctttctat |
162 |
Q |
| |
|
| | || |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1895553 |
gcaaaacatccatgtaaaaggaccatcttcttgtcatgtttctat |
1895509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 1902064 - 1901922
Alignment:
| Q |
18 |
gcaacaaaaacatagttgttcatcccttgaagtgtggctgctttgtataaaatgactaaagccacatcactgaattcattgcttgcaatcaccacaattg |
117 |
Q |
| |
|
|||| ||| |||| ||||||||||||||||||||| | |||||| | ||| ||| |||||||| ||| ||||||||| | |||||||||| || |
|
|
| T |
1902064 |
gcaataaagacatggttgttcatcccttgaagtgttacagctttgaacaaagtgagtaaagccatgtcagaacattcattgcctataatcaccacaggtg |
1901965 |
T |
|
| Q |
118 |
gtagaaaatccatgtaaaaggaccatcttcttgtcatctttct |
160 |
Q |
| |
|
| | || ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
1901964 |
gcaaaacatccatgtaaagtgaccatcttcttgtcatgtttct |
1901922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 11549179 - 11549123
Alignment:
| Q |
104 |
aatcaccacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctttct |
160 |
Q |
| |
|
|||||| |||| |||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
11549179 |
aatcactacaaccggtagaaaatccatgtaaaaagaccatcttcttttcatctttct |
11549123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 157
Target Start/End: Complemental strand, 11537506 - 11537453
Alignment:
| Q |
104 |
aatcaccacaattggtagaaaatccatgtaaaaggaccatcttcttgtcatctt |
157 |
Q |
| |
|
|||||| |||| |||||||||||| |||||||| || ||||||||| ||||||| |
|
|
| T |
11537506 |
aatcactacaactggtagaaaatctatgtaaaaagatcatcttcttttcatctt |
11537453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University