View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2483_high_2 (Length: 618)
Name: NF2483_high_2
Description: NF2483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2483_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 419 - 613
Target Start/End: Complemental strand, 3144501 - 3144307
Alignment:
| Q |
419 |
cgtgttaaggtaatgaaggaaatgaatgcagttaataatgttagttggtgaatgaagtcagaaataatagagaaagtgaagaagagagagtaatggtcgc |
518 |
Q |
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| T |
3144501 |
cgtgttaaggtaatgaaggaaatgaatgcagttaataatgtaagttggtgaatgaagtcagaaataatagagaaagtgaagaagagagagtaatggtcgc |
3144402 |
T |
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| Q |
519 |
cgccttatttgcttaaaaccaagtccaagatgagttaagattatggttggggcgcaaatctcaaaagagtgaatgagagaggtctgtactctgtg |
613 |
Q |
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| T |
3144401 |
cgccttatttgcttaaaactaagtccaagatgagttaagattatggttggggcgcaaatctcaaaagagtgaatgagagaggtctgtactctgtg |
3144307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 224 - 369
Target Start/End: Complemental strand, 3144694 - 3144550
Alignment:
| Q |
224 |
taacctgacaaacttgccatcagattgaagtgcatcaggctttgaacccaacttcataaacttcatttttggtttcnnnnnnncttgaaaaccaaacaaa |
323 |
Q |
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| T |
3144694 |
taacctgacaaacttgccatcagattgaagtgcatcaggctttgaacccaacttcataaacttcatttttg-tttctttttttcttgaaaaccaaacaaa |
3144596 |
T |
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| Q |
324 |
gaaagtaggggcacgtatgttgagaagtaagacagtgaaagaaagc |
369 |
Q |
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| T |
3144595 |
gaaagtaggatcacgtatgttgagaagtaagacagtgaaagaaagc |
3144550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 3144866 - 3144802
Alignment:
| Q |
17 |
agaagaatcaagcggttactagcagtgactcatcaaacaccaaaactatttcggtttatattcag |
81 |
Q |
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| T |
3144866 |
agaagaatcaagcggttactagcagtgactcatcaaacaccaaaactatttcggtttatattcag |
3144802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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