View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2483_high_5 (Length: 438)
Name: NF2483_high_5
Description: NF2483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2483_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 12 - 425
Target Start/End: Complemental strand, 16962850 - 16962435
Alignment:
| Q |
12 |
atgaacaaaaactatggaagaagagcggtactctgagtataaggcctaattggacttgagaggtgtacgatcagaaaagcccaattccaattttagctag |
111 |
Q |
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| T |
16962850 |
atgaataaaaactatggaagacgagcagtactatgagtataaggcctaattggacttgagaggtgtacgatc-gaaaagcccaattccaattttggctag |
16962752 |
T |
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| Q |
112 |
aaatataactaataaaacctaagtgataattgtcttacaagtcaattttccacatgttataacctatgttttccactggtcccatgtggaaaaaataaac |
211 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
16962751 |
aaatataactaataaaacctaattgatcattgtcttacaagtcaattttccacatgttataacctatgtttgccactggtcccatgtagaaaaaataaac |
16962652 |
T |
|
| Q |
212 |
gtcaaaatggtcatgcaatcacacatcagccctggcggcacacactctaatggtggtcacattc--atacatcaattttcgggttgtcatcttcttaagc |
309 |
Q |
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| T |
16962651 |
gtcaaaatggtcatgcaataacacatcagccctggcggcacacactctcatggtggtcacattcatatacatcaattttcgggttgtcattttttt---t |
16962555 |
T |
|
| Q |
310 |
ttt----ggaaacataactattactgagaagactgaagaggctcacaaattagcatgtaatatgacttgacacgtcatcaattaatcaagcaactaactt |
405 |
Q |
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||| |||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16962554 |
tttgaggggaaacataattattacggagaagactgaagaggctcacaaattagcatataatatgacttgacacgtcatcaattaatcaagcaactaactt |
16962455 |
T |
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| Q |
406 |
tacatactaatgatcataat |
425 |
Q |
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| T |
16962454 |
tacatactaatgatcataat |
16962435 |
T |
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