View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2483_high_9 (Length: 317)

Name: NF2483_high_9
Description: NF2483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2483_high_9
NF2483_high_9
[»] chr3 (10 HSPs)
chr3 (140-312)||(26736624-26736796)
chr3 (140-312)||(26713388-26713560)
chr3 (106-312)||(26743601-26743807)
chr3 (119-307)||(26750539-26750727)
chr3 (140-307)||(26733399-26733566)
chr3 (140-287)||(26698236-26698383)
chr3 (140-244)||(26691986-26692090)
chr3 (30-81)||(26743556-26743607)
chr3 (140-313)||(26675021-26675194)
chr3 (30-85)||(26750457-26750512)
[»] chr7 (1 HSPs)
chr7 (170-282)||(18658185-18658297)


Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 140 - 312
Target Start/End: Original strand, 26736624 - 26736796
Alignment:
Q  140 agcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat 239  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26736624 agcctctcaacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat 26736723  T
Q  240 aatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctaatccttttcttcttctctc 312  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| ||||    
T  26736724 aatttgatcccaatgcagggtcaacaatttcttcaacccaacaagcaacttctagtacttttcttcttttctc 26736796  T

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Target: chr3; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 140 - 312
Target Start/End: Original strand, 26713388 - 26713560
Alignment:
Q  140 agcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat 239  Q
    |||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26713388 agcctctcaacaacttgacttatggtgggtctaacatctttctcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat 26713487  T
Q  240 aatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctaatccttttcttcttctctc 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| ||||    
T  26713488 aatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctagtactttttttcttttctc 26713560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 106 - 312
Target Start/End: Original strand, 26743601 - 26743807
Alignment:
Q  106 taatgaatagccttaattatggtcatcccttaatagcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgca 205  Q
    ||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||    
T  26743601 taatggatagccttaattatgctcatcccttaatagcctctcaacaacttgactcatggtgggtctaacatctttctcttcctttacacaatccaaagca 26743700  T
Q  206 acatttgccaaagtttccattctctttgcatcataatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctaatccttttcttc 305  Q
    |||| ||||||||| |||||  ||||| ||||||||||||||||||||  ||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  26743701 acatctgccaaagtctccatcttctttacatcataatttgatcccaatttagggtcaacaatttgctcaacccaacaaccaacttctaatccttttcttc 26743800  T
Q  306 ttctctc 312  Q
    || ||||    
T  26743801 ttttctc 26743807  T

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Target: chr3; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 119 - 307
Target Start/End: Original strand, 26750539 - 26750727
Alignment:
Q  119 taattatggtcatcccttaatagcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaag 218  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| |    
T  26750539 taatcatggtcatcccttaatagcctctcaacaacttgactcatggtaggtctaacatctttatcttcttgtacacaatccaaagcaacatttgccaatg 26750638  T
Q  219 tttccattctctttgcatcataatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctaatccttttcttctt 307  Q
    | |||||  ||||| ||||||||||||||||||||   ||||| ||||||| | | ||||||||||||||||||| |||||||||||||    
T  26750639 tctccatcttctttacatcataatttgatcccaattttgggtctacaatttgtgccacccaacaaccaacttctactccttttcttctt 26750727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 140 - 307
Target Start/End: Original strand, 26733399 - 26733566
Alignment:
Q  140 agcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat 239  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26733399 agcctctcaacaacttgactcatggtgggtctaacatctttctcttcagccacacaatccaaagcaacatttgccaaagtttccattctctttgcatcat 26733498  T
Q  240 aatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctaatccttttcttctt 307  Q
    ||||||||||||||  ||||||| ||||||| |||||||||||||||| ||   ||||||||||||||    
T  26733499 aatttgatcccaatttagggtcagcaatttcctcaacccaacaaccaaatttagatccttttcttctt 26733566  T

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Target: chr3; HSP #6
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 140 - 287
Target Start/End: Original strand, 26698236 - 26698383
Alignment:
Q  140 agcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat 239  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26698236 agcctctcaacaacttgactcatggtgggtctaacatctttctcttcagacacacaatccaaagcaacatttgccaaagtttccattctctttgcatcat 26698335  T
Q  240 aatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaa 287  Q
    ||||||||||||||  ||||||| ||||||| ||||||||||||||||    
T  26698336 aatttgatcccaatttagggtcagcaatttcctcaacccaacaaccaa 26698383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 140 - 244
Target Start/End: Original strand, 26691986 - 26692090
Alignment:
Q  140 agcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcat 239  Q
    |||||||| ||||||||||||||||| |||||||||||||| |||||    ||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  26691986 agcctctcaacaacttgactcatggtaggtctaacatctttttcttcagccacacaatccaaagcaacatttgtcaaagtttccattctctttgcatcat 26692085  T
Q  240 aattt 244  Q
    |||||    
T  26692086 aattt 26692090  T

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Target: chr3; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 26743556 - 26743607
Alignment:
Q  30 aaaattgtgataacaacctccatgaatctaattacatctagaaaataatgga 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26743556 aaaattgtgataacaacctccatgaatctaattacatctagaaaataatgga 26743607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 140 - 313
Target Start/End: Original strand, 26675021 - 26675194
Alignment:
Q  140 agcctctcgacaacttgactcatggtgggtctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagt-ttccatt-ctctttgcatc 237  Q
    |||||||| |||||||||||||||||||||||||||||||| |||| || |||||||||||| || ||   |||||| || ||| |||   |  ||  ||    
T  26675021 agcctctcaacaacttgactcatggtgggtctaacatctttctctttctctacacaatccaaagccaccactgccaaggtcttcaattgaacaatg--tc 26675118  T
Q  238 ataatttgatcccaatgcagggtcaacaatttcttcaacccaacaaccaacttctaatccttttcttcttctctct 313  Q
    ||||||| ||||||||||||||||||| |||| ||||| |||||| || |||||| || |||| |||||| |||||    
T  26675119 ataatttaatcccaatgcagggtcaactatttgttcaatccaacatcccacttctgattctttccttcttttctct 26675194  T

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Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 26750457 - 26750512
Alignment:
Q  30 aaaattgtgataacaacctccatgaatctaattacatctagaaaataatggaaaca 85  Q
    ||||||||||||||| ||||| |||||| |||||||| ||||||||||||||||||    
T  26750457 aaaattgtgataacatcctccttgaatcaaattacatgtagaaaataatggaaaca 26750512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 282
Target Start/End: Original strand, 18658185 - 18658297
Alignment:
Q  170 ctaacatctttatcttcctgtacacaatccaatgcaacatttgccaaagtttccattctctttgcatcataatttgatcccaatgcagggtcaacaattt 269  Q
    |||| |||| ||||||||| |||||||||||| ||||| || ||||||  ||||||  | |||  |||| |||| |  |||| |||||| || | |||||    
T  18658185 ctaatatctctatcttcctctacacaatccaaagcaactttagccaaaacttccatcttatttaaatcacaattggtccccattgcaggatccataattt 18658284  T
Q  270 cttcaacccaaca 282  Q
    |||||||||||||    
T  18658285 cttcaacccaaca 18658297  T

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