View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2483_low_1 (Length: 650)
Name: NF2483_low_1
Description: NF2483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2483_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 35 - 639
Target Start/End: Original strand, 45565492 - 45566096
Alignment:
| Q |
35 |
cagcacctgcgcctctgctaactgaatcccacagatcagcctcgcaccatatttgttttgccgctttacatccaatcgttctcatagtttgtttcacaat |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45565492 |
cagcacctgcgcctctgctaactgaatcccacagatcagcctcgcaccatatttgttttgccgctttacatccaatcgttctcatagtttgtttcacaat |
45565591 |
T |
|
| Q |
135 |
ggggacatccatttgaacatagaactcctctctcttgaagtctcataagagtaggaagaatacctccaagcacacttcaaagaaaaactttgatctgtta |
234 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45565592 |
ggggacatccatttgaacatggaactcctctcttttgaagtctcataagagtaggaagaatacctccaagcacacttcaaagaaaaactttgatctgtta |
45565691 |
T |
|
| Q |
235 |
gagaattcgcaaaccccacattctcatccattcgcccaacatcatctctttgcacgcagaattcataaaataggagctagcaaccacgtaaagttcatgt |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45565692 |
cagaattcgcaaaccccacattctcatccattcaccgaacatcatctctttgcacgcagaattcataaaataggagctagcaaccacgtaaagttcatgt |
45565791 |
T |
|
| Q |
335 |
tgcgccacaaccaaagtcctatcatctttcttcaagtttgtaaaagtattgcatcatctctttgcactcgccatggcttgaaagaatcgcgcattggtgt |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45565792 |
tgcgccacaaccaaagtcctatcatctttcttcaagtttgtaaaagtattgcatcatctctttgcactcgccatggcttgaaagaatcgcgcattggtat |
45565891 |
T |
|
| Q |
435 |
caccatccttaagccaaatcacctttgctatttgtttccaaaatgcttctgcttgtgccaataatcctcccattcaaatatgtacctccttagagcgccc |
534 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
45565892 |
caccatccttaagccaaatcacctttgctatttgtttccaaaatgcttctgcttgtgccaataatcctctcattcaaatatgtacctccttagagcgcgc |
45565991 |
T |
|
| Q |
535 |
aatttgggaagcttgcacgctgcccctaaatctatctaactcatcccgacattcatcaatggaaacttgatacttactttggagctttcttcccggttcg |
634 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
45565992 |
aatttgggaagcttgcacgctgcccctaaatctctctaactcatcccgacattcatcaatggaaactcgatacttactttggagctttcttccccgttcg |
45566091 |
T |
|
| Q |
635 |
ttcat |
639 |
Q |
| |
|
||||| |
|
|
| T |
45566092 |
ttcat |
45566096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 434 - 495
Target Start/End: Original strand, 8179388 - 8179449
Alignment:
| Q |
434 |
tcaccatccttaagccaaatcacctttgctatttgtttccaaaatgcttctgcttgtgccaa |
495 |
Q |
| |
|
||||||||||| |||||||||||||| ||| |||| |||||||| |||||| |||||||||| |
|
|
| T |
8179388 |
tcaccatccttcagccaaatcaccttagctctttgcttccaaaacgcttcttcttgtgccaa |
8179449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 45286972 - 45286940
Alignment:
| Q |
106 |
ccaatcgttctcatagtttgtttcacaatgggg |
138 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
45286972 |
ccaatcgttctcgtagtttgtttcacaatgggg |
45286940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University