View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2483_low_11 (Length: 313)
Name: NF2483_low_11
Description: NF2483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2483_low_11 |
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| [»] scaffold0078 (3 HSPs) |
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| [»] scaffold0184 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 16566882 - 16567093
Alignment:
| Q |
18 |
atgacattgtggaaaaggagaaaattgcaaagatgattaagtgtgttatggaaggggaagaaggtatggcaatgcgtgatagaatgaagagtttaagaga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
16566882 |
atgacattgtggaaaaggagaaaattgcaaagatgattaagtctgttatggaaggggaagaaggcatggcaatgcgtgatagaatgaagagtttaagaga |
16566981 |
T |
|
| Q |
118 |
atctgctgctatggcattgaaagttaaagatggttcttcaatacaaactatttcacacttggctactcaattggagaagattggtgggatttaggaaaat |
217 |
Q |
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| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16566982 |
agctgctgctatggcattgaatgccaaagatggttcttcaatacaaactatttcacacttggctactcaattggagaagattggtgggatttaggaaaat |
16567081 |
T |
|
| Q |
218 |
aatattgctctt |
229 |
Q |
| |
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|||||||||||| |
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| T |
16567082 |
aatattgctctt |
16567093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 16598780 - 16598569
Alignment:
| Q |
18 |
atgacattgtggaaaaggagaaaattgcaaagatgattaagtgtgttatggaaggggaagaaggtatggcaatgcgtgatagaatgaagagtttaagaga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
16598780 |
atgacattgtggaaaaggagaaaattgcaaagatgattaagtctgttatggaaggggaagaaggcatggcaatgcgtgatagaatgaagagtttaagaga |
16598681 |
T |
|
| Q |
118 |
atctgctgctatggcattgaaagttaaagatggttcttcaatacaaactatttcacacttggctactcaattggagaagattggtgggatttaggaaaat |
217 |
Q |
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| T |
16598680 |
agctgctgctatggcattgaatgccaaagatggttcttcaatacaaactatttcacacttggctactcaattggagaagattggtgggatttaggaaaat |
16598581 |
T |
|
| Q |
218 |
aatattgctctt |
229 |
Q |
| |
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|||||||||||| |
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| T |
16598580 |
aatattgctctt |
16598569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 168; Significance: 5e-90; HSPs: 3)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 18 - 229
Target Start/End: Original strand, 3226 - 3437
Alignment:
| Q |
18 |
atgacattgtggaaaaggagaaaattgcaaagatgattaagtgtgttatggaaggggaagaaggtatggcaatgcgtgatagaatgaagagtttaagaga |
117 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3226 |
atgagattgtggaaaaggagaaaattgcaaagatgattaagtgtgttatggaaggggaagaaggtattgcaatgcgtgatagaatgaagagtttaagaga |
3325 |
T |
|
| Q |
118 |
atctgctgctatggcattgaaagttaaagatggttcttcaatacaaactatttcacacttggctactcaattggagaagattggtgggatttaggaaaat |
217 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||||| |||||||| ||||| |
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| T |
3326 |
atctgctgctatggcattgaaagccaaagatggttcttcaattcaaactatgtcacacttggctactcaattggaaaacattggtaggatttagaaaaat |
3425 |
T |
|
| Q |
218 |
aatattgctctt |
229 |
Q |
| |
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| |||||||||| |
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| T |
3426 |
agtattgctctt |
3437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 22480 - 22678
Alignment:
| Q |
18 |
atgacattgtggaaaaggagaaaattgcaaagatgattaagtgtgttatggaaggggaagaaggtatggcaatgcgtgatagaatgaagagtttaagaga |
117 |
Q |
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|||| ||||| |||||||| ||||||||||| ||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22480 |
atgagattgtagaaaaggataaaattgcaaatgtgattaagtgtttgatggaaggggaagaaggtaaggcaatgcgtgatagaatgaagagtttaagaga |
22579 |
T |
|
| Q |
118 |
atctgctgctatggcattgaaagttaaagatggttcttcaatacaaactatttcacacttggctactcaattggagaagattggtgggatttaggaaaa |
216 |
Q |
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| |||| ||| ||||||||| || ||||||||||||||||| |||||| | ||||||||||||| |||| |||| | ||||||||||||||||||||| |
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| T |
22580 |
ttatgctactaaggcattgaatgtcaaagatggttcttcaattcaaactctctcacacttggctagtcaaatggaaatgattggtgggatttaggaaaa |
22678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 57769 - 57960
Alignment:
| Q |
18 |
atgacattgtggaaaaggagaaaattgcaaagatgattaagtgtgttatggaaggggaagaaggtatggcaatgcgtgatagaatgaagagtttaagaga |
117 |
Q |
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|||| ||||| |||||||| |||||||||| ||||||||||| | ||||||||||||||||||| | ||||||||| |||||||||||||||| ||| |
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| T |
57769 |
atgagattgtagaaaaggatgaaattgcaaatgtgattaagtgtttgatggaaggggaagaaggtaagagaatgcgtgaaagaatgaagagtttaaaaga |
57868 |
T |
|
| Q |
118 |
atctgctgctatggcattgaaagttaaagatggttcttcaatacaaactatttcacacttggctactcaattggagaagattggtgggatttagg |
212 |
Q |
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| |||||||| ||| | |||| | | ||||||||||||||| ||| | ||||||||||||| ||||| ||| || ||||||||| ||||| |
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|
| T |
57869 |
ttatgctgctaatgcacttaaag---atggtggttcttcaatacagactttgtcacacttggctagtcaatgggaaaattttggtgggacttagg |
57960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 212
Target Start/End: Complemental strand, 15075 - 14884
Alignment:
| Q |
18 |
atgacattgtggaaaaggagaaaattgcaaagatgattaagtgtgttatggaaggggaagaaggtatggcaatgcgtgatagaatgaagagtttaagaga |
117 |
Q |
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|||| ||||| |||||||| |||||||||| ||||||||||| | ||||||||||||||||||| | ||||||||| |||||||||||||||| ||| |
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| T |
15075 |
atgagattgtagaaaaggatgaaattgcaaatgtgattaagtgtttgatggaaggggaagaaggtaagagaatgcgtgaaagaatgaagagtttaaaaga |
14976 |
T |
|
| Q |
118 |
atctgctgctatggcattgaaagttaaagatggttcttcaatacaaactatttcacacttggctactcaattggagaagattggtgggatttagg |
212 |
Q |
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| |||||||| ||| | |||| | | ||||||||||||||| ||| | ||||||||||||| ||||| ||| || ||||||||| ||||| |
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| T |
14975 |
ttatgctgctaatgcacttaaag---atggtggttcttcaatacagactttgtcacacttggctagtcaatgggaaaattttggtgggacttagg |
14884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 1839 - 1934
Alignment:
| Q |
18 |
atgacattgtggaaaaggagaaaattgcaaagatgattaagtgtgttatggaaggggaagaaggtatggcaatgcgtgatagaatgaagagtttaa |
113 |
Q |
| |
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|||| |||||||||||||| |||| |||||| ||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1839 |
atgagattgtggaaaaggataaaactgcaaatgtgattaagtgtttgatggaaggggaagaaggtaaaacaatgcgtgatagaatgaagagtttaa |
1934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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