View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2483_low_13 (Length: 275)
Name: NF2483_low_13
Description: NF2483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2483_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 86 - 260
Target Start/End: Original strand, 39330610 - 39330784
Alignment:
| Q |
86 |
gttcttctgggtgctaaatcaactatgctgcaggtgctatatcgatatcgccatcatcgtcgtctccttcactcttcctctgagtgcaacagttgttgaa |
185 |
Q |
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| T |
39330610 |
gttcttctgggtgctaaatcaactatgctgcaggtgctatatcaatatcaccatcatcgtcgtctccttcactcttcctctgagtgcaacagttgttgaa |
39330709 |
T |
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| Q |
186 |
ttgagttgcagccaagtcacttcccatgtttctcatgagaagatttgattccatggaacttaggaccaccattgt |
260 |
Q |
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| T |
39330710 |
ttgagttgcagccaagtcacttcccatgtttctcatgagaagatttgattccatggaacttaggaccaccattgt |
39330784 |
T |
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Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 39330600 - 39330522
Alignment:
| Q |
7 |
gagagatgaagagttatagctattagctagcagcacctgagttgtgctgcatttgtagaataagaaatgggggtattta |
85 |
Q |
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|||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39330600 |
gagaaatgaagagttatagatattggctagcagcacctgagttgtgctgcatttgtagaataagaaatgggggtattta |
39330522 |
T |
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