View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2483_low_3 (Length: 550)
Name: NF2483_low_3
Description: NF2483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2483_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 17 - 511
Target Start/End: Original strand, 10922031 - 10922529
Alignment:
| Q |
17 |
tgaacaacgcttgtaatttccaatattggtttagtttctataatatatctctacttagtttacgttcttttaagattgttttagtgcttatttcatgtta |
116 |
Q |
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| T |
10922031 |
tgaacaacgcttataatttccaatattggtttagtttctataatatatctctacttagtttacttt-ttttaagattgttttagtgcttatttcatgtta |
10922129 |
T |
|
| Q |
117 |
tcaaaattcaacctcaccgcctattggaggcaaaatttgtagatacatatcgtatttattg-----ttgtgaaaatcaagtctaaccacagattcaattg |
211 |
Q |
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| T |
10922130 |
tcaaacttcaacctcaccgcctattggaggcaaaatttgtagatacatatcgtatttattgcagtgttgtgaaaatcaagtcgaaccacagattcaattg |
10922229 |
T |
|
| Q |
212 |
gtttaacaactatagtcgattttctatgtatactacctgtataatgtaccatcaccaatgcttatcattcacaaggtacgagtatatatacaaaatcagt |
311 |
Q |
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| T |
10922230 |
gtttaacaactatagtcgattttctatgtatactacctgtataatttaccatcaccaacgcttatcattcacaaggtacgagtatatatacaaaatcagt |
10922329 |
T |
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| Q |
312 |
tgcagcaatatgattaacagcttaacaactttaaagtattgtcttagatattaggcatcaccaaattcaccaagaataaacaattaatttacaagctgtc |
411 |
Q |
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| T |
10922330 |
tgcagcaatatgattaacggcttaacaactttaaagtattgtcttagatattaggcatcaccaaattcaccaagaataaacaattaatttacaagctgtc |
10922429 |
T |
|
| Q |
412 |
tagcgtcgtgtgactggtttatttaatgaccatagtgcattgcatcaaaattcacgacttcatgttcgataaatgtataactcctctagcaattagactc |
511 |
Q |
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| T |
10922430 |
tagcgtcgtgtgactggtttatttaatgaccatagtgcattgcatcaaaattcacgacttcatgttagataaatgtataactcctctagcaattagactc |
10922529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 10950452 - 10950504
Alignment:
| Q |
17 |
tgaacaacgcttgtaatttccaatattggtttagtttctataatatatctcta |
69 |
Q |
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|||||||| ||||| ||||| ||| || ||||||||||||| ||||||||||| |
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| T |
10950452 |
tgaacaacacttgttatttcgaatcttagtttagtttctattatatatctcta |
10950504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 149 - 177
Target Start/End: Original strand, 10951102 - 10951130
Alignment:
| Q |
149 |
aaatttgtagatacatatcgtatttattg |
177 |
Q |
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| T |
10951102 |
aaatttgtagatacatatcgtatttattg |
10951130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 138; Significance: 7e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 232 - 533
Target Start/End: Original strand, 45407119 - 45407425
Alignment:
| Q |
232 |
tttctatgtatactacctgtataatgtaccatcaccaatgcttatcattcacaaggtacgagtatatatacaaaatcagttgcagcaatatgattaacag |
331 |
Q |
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|||||||||||||||| |||||||||||||| | | | ||||||||||||||||||| |||| ||||||||||||||||||||||||||||| || |
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| T |
45407119 |
tttctatgtatactacatgtataatgtaccagtat-agcacctatcattcacaaggtacgattata--tacaaaatcagttgcagcaatatgattaatag |
45407215 |
T |
|
| Q |
332 |
cttaacaactttaaagtattgtcttagatattaggcatcaccaaattcaccaagaataaacaattaatttacaagctgtctagcg-------tcgtgtga |
424 |
Q |
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||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||||||||||| |||||||||||||||| |||||||| |
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| T |
45407216 |
cttaacaactttaaagtattgtcttagatatcagccatcaccaaatacaccaataataaacaattaa--tacaagctgtctagcgtcgtgactcgtgtga |
45407313 |
T |
|
| Q |
425 |
ctggtttattta---atgaccatagtgcattgcatcaaaattcacgacttcatgttcgataaatgtataactcctctagcaattagactcaagtagttaa |
521 |
Q |
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|||||||||||| |||||||||||||| |||||||||||| | |||||| |||| ||||||||||| ||| ||||| |||||| ||| |||| ||||| |
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| T |
45407314 |
ctggtttatttaatcatgaccatagtgcaatgcatcaaaatttatgacttcgtgtttgataaatgtatgacttctctaacaattaaacttaagtggttaa |
45407413 |
T |
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| Q |
522 |
taaattacgatt |
533 |
Q |
| |
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||| |||||||| |
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| T |
45407414 |
taagttacgatt |
45407425 |
T |
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