View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2483_low_7 (Length: 346)
Name: NF2483_low_7
Description: NF2483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2483_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 113 - 336
Target Start/End: Original strand, 44056988 - 44057211
Alignment:
| Q |
113 |
ctaaatttgaaagaatatggttgaagtccagttcatggacagatattgcagatggatgataaggagggaaaataatgtaagaagaaaaggaaggactatt |
212 |
Q |
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| T |
44056988 |
ctaaatttgaaagaatatggttgaagtccagttcttggacagatattgcagatggatgataaggagggaaaataatgtaagaagaaaaggaaggactatt |
44057087 |
T |
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| Q |
213 |
tttcgtttttgctttgtttgacgaaaattagaaactagaggaaggtagagagaaaagaaggttggttttgttttggtggttttccactccaagtgggaat |
312 |
Q |
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| T |
44057088 |
tttcgtttttgctttgtttgacgaaaattagaaactagaggaaggtagagagaaaagaaggttggttttgttttggtggttttccactccaattgggaat |
44057187 |
T |
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| Q |
313 |
tcaagttaaattctacggcctatg |
336 |
Q |
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| T |
44057188 |
tcaagttaaattctacggcctatg |
44057211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 44056904 - 44056975
Alignment:
| Q |
16 |
cattaacaaggcactagcagcatataatagacaatatcacattccagcataatttgttattgagctttgtac |
87 |
Q |
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| T |
44056904 |
cattaacaaggcactagcagcatataatagacaatatcacattccagcacaatttgttattgagctttgtac |
44056975 |
T |
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