View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2483_low_8 (Length: 340)
Name: NF2483_low_8
Description: NF2483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2483_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 102 - 332
Target Start/End: Complemental strand, 50789267 - 50789043
Alignment:
| Q |
102 |
attttgtactttacgcgttgagctgaaaaactgaactttgttgtttcaaaccttggaagtggatttttgctttcgattcatattaaattaaatttagaat |
201 |
Q |
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| T |
50789267 |
attttgtactttacgcgttgagctgaaaaactgaactttgttgtttcaaaccttggaagtggatttttgctttcgattcatattaaattaaatttagaat |
50789168 |
T |
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| Q |
202 |
ggtctcaaattttctgcattttgacagtgatttttatatcatgttttagctnnnnnnnnnttgtacacttctaagaagtcttagatgttaatatctctac |
301 |
Q |
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| T |
50789167 |
ggtctcaaatattctgcattttgacagtgatttttatatcatgttttagct--aaaaaaattgtacacttctaagaagtcttagatgttaatatct---- |
50789074 |
T |
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| Q |
302 |
atacatacatgccttgattctggtctctgct |
332 |
Q |
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| T |
50789073 |
ttacatacatgccttgattctggtttctgct |
50789043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 50789788 - 50789726
Alignment:
| Q |
20 |
ttgcctacctaagtctttgggag--aaatttggcaaatgttgtaagttatttggtcccaaatt |
80 |
Q |
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| T |
50789788 |
ttgcctacctaagtctttgggatctaaatttggcaaatgttgtaagttatttggtcccaaatt |
50789726 |
T |
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