View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2484_high_1 (Length: 596)

Name: NF2484_high_1
Description: NF2484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2484_high_1
NF2484_high_1
[»] chr8 (7 HSPs)
chr8 (195-576)||(43907523-43907904)
chr8 (189-221)||(2595076-2595108)
chr8 (195-225)||(35374448-35374478)
chr8 (195-225)||(42237497-42237527)
chr8 (195-223)||(773294-773322)
chr8 (195-223)||(778354-778382)
chr8 (195-223)||(787788-787816)
[»] chr5 (8 HSPs)
chr5 (66-220)||(7907699-7907862)
chr5 (16-56)||(7907620-7907660)
chr5 (121-193)||(28776850-28776923)
chr5 (195-225)||(9202823-9202853)
chr5 (195-225)||(12595815-12595845)
chr5 (122-160)||(29845054-29845092)
chr5 (124-160)||(6593177-6593213)
chr5 (195-223)||(10363715-10363743)
[»] chr2 (1 HSPs)
chr2 (122-225)||(16451014-16451120)
[»] chr4 (5 HSPs)
chr4 (189-225)||(13949919-13949955)
chr4 (119-162)||(39178390-39178433)
chr4 (122-160)||(47399409-47399447)
chr4 (247-288)||(25487466-25487507)
chr4 (117-145)||(30090128-30090156)
[»] chr3 (6 HSPs)
chr3 (116-180)||(47132237-47132302)
chr3 (195-225)||(10101551-10101581)
chr3 (195-225)||(10212476-10212506)
chr3 (195-225)||(15304422-15304452)
chr3 (119-160)||(34118828-34118869)
chr3 (193-225)||(21574454-21574486)
[»] chr1 (5 HSPs)
chr1 (126-160)||(10280521-10280555)
chr1 (119-178)||(35058893-35058954)
chr1 (116-145)||(2478489-2478518)
chr1 (117-145)||(9236988-9237016)
chr1 (192-220)||(14331751-14331779)
[»] chr6 (1 HSPs)
chr6 (195-224)||(10728597-10728626)


Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 195 - 576
Target Start/End: Complemental strand, 43907904 - 43907523
Alignment:
Q  195 aagataaaataaagttaaattgttttcatatgctatgtcaagtgattatataaatagataaactcaaatgagttaatcaaaataggcctatagtatagat 294  Q
    ||||||||||||||| |||||||||||||| ||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43907904 aagataaaataaagtcaaattgttttcataagctatgtcaagtgtttatgtcaatagataaactcaaatgagttaatcaaaataggcctatagtatagat 43907805  T
Q  295 tataaaatgagatatggtgtgaaataccgttatggtgtctgttacttttatataggttcaggttgatcatggaagaggtggggctgctttcaaattcaac 394  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43907804 tataaaatgagatacggtgtgaaataccgttatggtgtctgttacttttatataggttcaggttgatcatggaagaggtggggctgctttcaaattcaac 43907705  T
Q  395 ataatttggaacagaatcaacaacatttcttgattgaaagttttcttgaaacgctcccatctctttattttcgaagtcagaaacttgcggcgattgatgc 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43907704 ataatttggaacagaatcaacaacatttcttgattgaaagttttcttgaaacgctcccacctctttattttcgaagtcagaaacttgcggcgattgatgc 43907605  T
Q  495 atagacaatgtttcggaacaatcattttcttctgatccttccacaaagctctctcgtgggctaatgaattcttcagaatgag 576  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43907604 atagacaatgtttcggaacaatcattttcttctgatccttccacaaagctctctcgtgggctaatgaattcttcagaatgag 43907523  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 2595108 - 2595076
Alignment:
Q  189 tataacaagataaaataaagttaaattgttttc 221  Q
    |||||||||||||||||||||||||||||||||    
T  2595108 tataacaagataaaataaagttaaattgttttc 2595076  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 225
Target Start/End: Complemental strand, 35374478 - 35374448
Alignment:
Q  195 aagataaaataaagttaaattgttttcatat 225  Q
    |||||||||||||||||||||||||||||||    
T  35374478 aagataaaataaagttaaattgttttcatat 35374448  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 225
Target Start/End: Complemental strand, 42237527 - 42237497
Alignment:
Q  195 aagataaaataaagttaaattgttttcatat 225  Q
    |||||||||||||||||||||||||||||||    
T  42237527 aagataaaataaagttaaattgttttcatat 42237497  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 773294 - 773322
Alignment:
Q  195 aagataaaataaagttaaattgttttcat 223  Q
    |||||||||||||||||||||||||||||    
T  773294 aagataaaataaagttaaattgttttcat 773322  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 778354 - 778382
Alignment:
Q  195 aagataaaataaagttaaattgttttcat 223  Q
    |||||||||||||||||||||||||||||    
T  778354 aagataaaataaagttaaattgttttcat 778382  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 787788 - 787816
Alignment:
Q  195 aagataaaataaagttaaattgttttcat 223  Q
    |||||||||||||||||||||||||||||    
T  787788 aagataaaataaagttaaattgttttcat 787816  T

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Target: chr5 (Bit Score: 116; Significance: 1e-58; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 66 - 220
Target Start/End: Original strand, 7907699 - 7907862
Alignment:
Q  66 actgattgaatgtaaccatgtgagtgctacatatttattacattgttatttactaaggccctgtttggataaacaacttagtttacaacttatag----- 160  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||         
T  7907699 actgattgaatgtaaccatgtgggtgctacatatctattacattgttatttactaaggccctgtttggataaacaacttattttacaacttatagtatgt 7907798  T
Q  161 ----taagcacttatcgtgataagagctcatgtataacaagataaaataaagttaaattgtttt 220  Q
        ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7907799 ataataagcacttatcgtgataagacctcatgtataacaagataaaataaagttaaattgtttt 7907862  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 7907620 - 7907660
Alignment:
Q  16 ttaattacttcttctattagttattatgaagcaccgacacc 56  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  7907620 ttaattacttcttctattagttattatgaagcacccacacc 7907660  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 28776850 - 28776923
Alignment:
Q  121 aggccctgtttggataaacaacttagtttacaacttatag--taagcacttatcgtgataagagctcatgtataa 193  Q
    |||| |||||||||||||||||||| ||| || |||||||  |||||||||||| ||||||| ||| ||||||||    
T  28776850 aggctctgtttggataaacaactta-tttgcagcttatagcctaagcacttatcatgataagtgcttatgtataa 28776923  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 225
Target Start/End: Complemental strand, 9202853 - 9202823
Alignment:
Q  195 aagataaaataaagttaaattgttttcatat 225  Q
    |||||||||||||||||||||||||||||||    
T  9202853 aagataaaataaagttaaattgttttcatat 9202823  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 225
Target Start/End: Complemental strand, 12595845 - 12595815
Alignment:
Q  195 aagataaaataaagttaaattgttttcatat 225  Q
    |||||||||||||||||||||||||||||||    
T  12595845 aagataaaataaagttaaattgttttcatat 12595815  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 160
Target Start/End: Complemental strand, 29845092 - 29845054
Alignment:
Q  122 ggccctgtttggataaacaacttagtttacaacttatag 160  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  29845092 ggccctgtttggataaacaacttaatttgcaacttatag 29845054  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 6593177 - 6593213
Alignment:
Q  124 ccctgtttggataaacaacttagtttacaacttatag 160  Q
    |||||||||||||||||||||| |||||| |||||||    
T  6593177 ccctgtttggataaacaacttaatttacagcttatag 6593213  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 223
Target Start/End: Original strand, 10363715 - 10363743
Alignment:
Q  195 aagataaaataaagttaaattgttttcat 223  Q
    |||||||||||||||||||||||||||||    
T  10363715 aagataaaataaagttaaattgttttcat 10363743  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 122 - 225
Target Start/End: Original strand, 16451014 - 16451120
Alignment:
Q  122 ggccctgtttggataaacaacttagtttacaacttatag--taagcacttatcgtgataagagctcatgtataacaa--gataaaataaagttaaattgt 217  Q
    |||||| |||||||||||| |||| ||| || |||| ||  |||||||| ||| ||||||||||| |||| || |||  |||||||| ||||||||||||    
T  16451014 ggccctatttggataaacatctta-tttgcagcttacagcataagcactgatcatgataagagcttatgtctagcaaaagataaaatgaagttaaattgt 16451112  T
Q  218 tttcatat 225  Q
    ||||||||    
T  16451113 tttcatat 16451120  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 13949955 - 13949919
Alignment:
Q  189 tataacaagataaaataaagttaaattgttttcatat 225  Q
    ||||||||||||||||||||| |||||||||||||||    
T  13949955 tataacaagataaaataaagtcaaattgttttcatat 13949919  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 39178433 - 39178390
Alignment:
Q  119 taaggccctgtttggataaacaacttagtttacaacttatagta 162  Q
    ||||| ||||||||||||||||||||| |||||| |||||||||    
T  39178433 taaggtcctgtttggataaacaacttattttacagcttatagta 39178390  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 47399409 - 47399447
Alignment:
Q  122 ggccctgtttggataaacaacttagtttacaacttatag 160  Q
    |||||||||||||||||||||||||||| || |||||||    
T  47399409 ggccctgtttggataaacaacttagtttgcagcttatag 47399447  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 288
Target Start/End: Complemental strand, 25487507 - 25487466
Alignment:
Q  247 aatagataaactcaaatgagttaatcaaaataggcctatagt 288  Q
    ||||||||||||||||| |||||||||||||| | |||||||    
T  25487507 aatagataaactcaaataagttaatcaaaatatggctatagt 25487466  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 145
Target Start/End: Original strand, 30090128 - 30090156
Alignment:
Q  117 actaaggccctgtttggataaacaactta 145  Q
    |||||||||||||||||||||||||||||    
T  30090128 actaaggccctgtttggataaacaactta 30090156  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 47132237 - 47132302
Alignment:
Q  116 tactaaggccctgtttggataaacaacttagtttacaacttatag--taagcacttatcgtgataag 180  Q
    |||||||||||||||||||||||||||||| ||| || |||||||   ||||||||||| |||||||    
T  47132237 tactaaggccctgtttggataaacaactta-ttttcaccttatagcacaagcacttatcatgataag 47132302  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 225
Target Start/End: Complemental strand, 10101581 - 10101551
Alignment:
Q  195 aagataaaataaagttaaattgttttcatat 225  Q
    |||||||||||||||||||||||||||||||    
T  10101581 aagataaaataaagttaaattgttttcatat 10101551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 225
Target Start/End: Complemental strand, 10212506 - 10212476
Alignment:
Q  195 aagataaaataaagttaaattgttttcatat 225  Q
    |||||||||||||||||||||||||||||||    
T  10212506 aagataaaataaagttaaattgttttcatat 10212476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 225
Target Start/End: Complemental strand, 15304452 - 15304422
Alignment:
Q  195 aagataaaataaagttaaattgttttcatat 225  Q
    |||||||||||||||||||||||||||||||    
T  15304452 aagataaaataaagttaaattgttttcatat 15304422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 34118828 - 34118869
Alignment:
Q  119 taaggccctgtttggataaacaacttagtttacaacttatag 160  Q
    |||||| ||||||||||||||||||||  |||||||||||||    
T  34118828 taaggctctgtttggataaacaacttaaattacaacttatag 34118869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 225
Target Start/End: Original strand, 21574454 - 21574486
Alignment:
Q  193 acaagataaaataaagttaaattgttttcatat 225  Q
    ||||||||||||||||||||||||||| |||||    
T  21574454 acaagataaaataaagttaaattgtttacatat 21574486  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 160
Target Start/End: Original strand, 10280521 - 10280555
Alignment:
Q  126 ctgtttggataaacaacttagtttacaacttatag 160  Q
    ||||||||||||||||||||||||||| |||||||    
T  10280521 ctgtttggataaacaacttagtttacagcttatag 10280555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 119 - 178
Target Start/End: Complemental strand, 35058954 - 35058893
Alignment:
Q  119 taaggccctgtttggataaacaacttagtttacaacttatag--taagcacttatcgtgata 178  Q
    |||| ||||||||||||||||| |||| ||| ||||||||||  |||||||||||| |||||    
T  35058954 taagaccctgtttggataaacagcttattttgcaacttatagcataagcacttatcatgata 35058893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 145
Target Start/End: Complemental strand, 2478518 - 2478489
Alignment:
Q  116 tactaaggccctgtttggataaacaactta 145  Q
    ||||||||||||||||||||||||||||||    
T  2478518 tactaaggccctgtttggataaacaactta 2478489  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 117 - 145
Target Start/End: Complemental strand, 9237016 - 9236988
Alignment:
Q  117 actaaggccctgtttggataaacaactta 145  Q
    |||||||||||||||||||||||||||||    
T  9237016 actaaggccctgtttggataaacaactta 9236988  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 220
Target Start/End: Original strand, 14331751 - 14331779
Alignment:
Q  192 aacaagataaaataaagttaaattgtttt 220  Q
    |||||||||||||||||||||||||||||    
T  14331751 aacaagataaaataaagttaaattgtttt 14331779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 224
Target Start/End: Original strand, 10728597 - 10728626
Alignment:
Q  195 aagataaaataaagttaaattgttttcata 224  Q
    ||||||||||||||||||||||||||||||    
T  10728597 aagataaaataaagttaaattgttttcata 10728626  T

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