View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2484_high_3 (Length: 370)
Name: NF2484_high_3
Description: NF2484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2484_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 83 - 360
Target Start/End: Original strand, 32396973 - 32397250
Alignment:
| Q |
83 |
cttatcaggatgaagatagaccttatccctgaagagaagaataacaccagcttcatcaagaaccttagcatatgcagcagcctcttcagaattcctagca |
182 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32396973 |
cttatcaggatgaagatagaccttatccctgaagagaagaataacaccagcttcatcaagaaccttagcatatgcagcagcctcttcagaattcctagca |
32397072 |
T |
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| Q |
183 |
acacccatactctcacaagcttcaataagttcattataagaaataacttcttttccatccataccaagtttcatctttagagattctacattcaccaatc |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32397073 |
acacccatactctcacaagcttcaataagttcattataagaaataacttcttttccatccataccaagtttcatctttagagattccacattcaccaatc |
32397172 |
T |
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| Q |
283 |
tcataagcttcttagcttcagagaaagatatagtctcatctttccctttaacattgctgtgcacacccccattctctg |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
32397173 |
tcataagcttcttagcttcagagaaagatatagtctcatctttccctttaccattgctttgcacacccccattctctg |
32397250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 83 - 304
Target Start/End: Original strand, 28537352 - 28537573
Alignment:
| Q |
83 |
cttatcaggatgaagatagaccttatccctgaagagaagaataacaccagcttcatcaagaaccttagcatatgcagcagcctcttcagaattcctagca |
182 |
Q |
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|||||||||||| ||||| ||||||||||| || || |||| ||| ||||| |||||||||||||||||| || |||||||| || |||||||||| |
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| T |
28537352 |
cttatcaggatgcagataaaccttatccctaaatagtagaacaaccccagcatcatcaagaaccttagcaaattttgcagcctcatcttgattcctagca |
28537451 |
T |
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| Q |
183 |
acacccatactctcacaagcttcaataagttcattataagaaataacttcttttccatccataccaagtttcatctttagagattctacattcaccaatc |
282 |
Q |
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| ||| |||||| |||||||| || ||||||| ||| ||||||| |||||| || |||||||||||| |||||| || | ||| ||||||||||||| |
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| T |
28537452 |
ataccactactctgacaagcttgaagaagttcaaaataggaaataatttctttccctcccataccaagttccatcttaagtgtttcaacattcaccaatc |
28537551 |
T |
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| Q |
283 |
tcataagcttcttagcttcaga |
304 |
Q |
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|||||||||||||||| ||||| |
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| T |
28537552 |
tcataagcttcttagcctcaga |
28537573 |
T |
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