View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2484_high_5 (Length: 273)
Name: NF2484_high_5
Description: NF2484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2484_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 882544 - 882645
Alignment:
| Q |
15 |
cagtaagcatcttctcaagttggatattgtgaaaagcaagggaattaagcatatatatttttagtaacgcggttcacatttatatatgaatttattatct |
114 |
Q |
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| T |
882544 |
cagtaagcatcttcagaaggtagatactgtgaaaagaaggggcattaagcatatatatttttagtaacggggttcacatttatatatggatttaatatct |
882643 |
T |
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| Q |
115 |
at |
116 |
Q |
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|| |
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| T |
882644 |
at |
882645 |
T |
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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 882788 - 882853
Alignment:
| Q |
179 |
tttggtacatgttaaattttcgattgtactataaaaataataatccaattaaattgtttgttgatgaca |
247 |
Q |
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| T |
882788 |
tttggtacatgttgaattttccattgtactataaa---aataatccaattaaattgtttgttgatgaca |
882853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 882749 - 882808
Alignment:
| Q |
118 |
tcaacactatctatccaagaatatcaactactatagtctttttgatacatgttgaattttc |
178 |
Q |
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| T |
882749 |
tcaacactatctattcaagaatatcaac-actatagtctttttggtacatgttgaattttc |
882808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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