View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2484_high_6 (Length: 249)
Name: NF2484_high_6
Description: NF2484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2484_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 111 - 243
Target Start/End: Original strand, 885167 - 885299
Alignment:
| Q |
111 |
gtgtcaattgattaataatgtgagcgtaactctcacctgaaatttaatcattgtttcactgcattgtaaatagggtgtttgcattcaaaccaaattgcat |
210 |
Q |
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| T |
885167 |
gtgtcaattgattaataatgtgagtgtaactctcacctgaaatttaatcattgtttcactgcgttgcaaatagggtgtttgcattcaaaccaaattgcat |
885266 |
T |
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| Q |
211 |
aaataaattttaatacttttttattagtataat |
243 |
Q |
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| T |
885267 |
aatttttttttaatacttttttatttgtataat |
885299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 91 - 243
Target Start/End: Original strand, 882980 - 883128
Alignment:
| Q |
91 |
aagataatcatattttatgtgtgtcaattgattaataatgtgagcgtaactctcacctgaaatttaatcattgtttcactgcattgtaaatagggtgttt |
190 |
Q |
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| T |
882980 |
aagataatcatatttgaagtgtgccaattgattaat---gtgagcgtaactctcacctgaaatttaatcatcatttcactcagttgtaaatagggtgttt |
883076 |
T |
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| Q |
191 |
gcattcaaaccaaattgcat-aaataaattttaatacttttttattagtataat |
243 |
Q |
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| T |
883077 |
acattcaaaccaaactatataaaataaa--tgaatacttttttatttgtataat |
883128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 210
Target Start/End: Original strand, 884236 - 884352
Alignment:
| Q |
91 |
aagataatcatattttatgtgtgtcaattgattaataatgtgagcgtaactctcacctgaaatttaatcattgtttcactgcattgtaaatagggtgttt |
190 |
Q |
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| T |
884236 |
aagataatcatatttgaaatgtgccaattgattgat---gtgagcgtaatgctcatgtgaaatttaatcattgtttcacttctttgcaaataaggtgttt |
884332 |
T |
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| Q |
191 |
gcattcaaaccaaattgcat |
210 |
Q |
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|||||||| |||| ||||| |
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| T |
884333 |
acattcaaaacaaactgcat |
884352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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