View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2484_low_10 (Length: 241)
Name: NF2484_low_10
Description: NF2484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2484_low_10 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 70 - 241
Target Start/End: Original strand, 26235809 - 26235980
Alignment:
| Q |
70 |
tccaaactaatccaagcctcacttccctactctacctgaccactgaccatgatagttctaacatggtctctgatgcggcttaatcatccgctaaagtata |
169 |
Q |
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| T |
26235809 |
tccaaactaatccaagcctcacttccctactccacctgaccactgaccatgatagttctaacatggtctctgatgcggcttaaccatccgctaaagtata |
26235908 |
T |
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| Q |
170 |
actaatggtgatctccatgttgctcaactgcaacctcatcaagggcctcttactcaggtggcctcaagataa |
241 |
Q |
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| T |
26235909 |
actaatggtgatctccatgttgctcaactgcaacctcataaagggcctcttgcttaggtggccttaagataa |
26235980 |
T |
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Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 26226779 - 26226838
Alignment:
| Q |
16 |
atctcaacacctctcttacactccttgtccccctaatgctataccagcagcccctccaaa |
75 |
Q |
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| T |
26226779 |
atctcaacacctctcttacactccttgtccccctaatgctataccagcagcccctccaaa |
26226838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 240
Target Start/End: Original strand, 4739494 - 4739535
Alignment:
| Q |
199 |
gcaacctcatcaagggcctcttactcaggtggcctcaagata |
240 |
Q |
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| T |
4739494 |
gcaacctcatcaagagcctcctactcaggtggcctcgagata |
4739535 |
T |
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