View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2484_low_2 (Length: 504)
Name: NF2484_low_2
Description: NF2484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2484_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 12 - 486
Target Start/End: Complemental strand, 42838254 - 42837780
Alignment:
| Q |
12 |
atcaggtgtagggtcttcctcataatgaacatatttacatgtgttcatgtgccggcaagtacgaagaaaaggacagtctcccaaattaatgtcagtatga |
111 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42838254 |
atcaggtgtagggtcttcctcatagtgaacatatttacatgtgttcatgtgccggcaagtacgaagaaaaggacagtctcccaaattaatgtcagtatga |
42838155 |
T |
|
| Q |
112 |
agagcaatgattcgtctaaaatgaagcttattacatgctataaaggaaccagtccggcgtcgacaatcttcttttgttggtaagtcacaatatggtctca |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
42838154 |
agagcaatgattcgtctaaaatgaagcttattacatgctataaaggaaccagtccggcgtcgacagtcttcttttgttggtaagtcacaatatggtctca |
42838055 |
T |
|
| Q |
212 |
tctgagaaccacctttagttttgaacttggcagctacagcagcctcccttatgcttggagtctgaataatttttaaaagctccttagcagtttcatattt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42838054 |
tctgagaaccacctttagttttgaacttggcagctacagcagcctcccttatgcttggagtctgaataatttttaaaagctccttagcagtttcatattt |
42837955 |
T |
|
| Q |
312 |
ttgcatctccctaaatgatttcttattaattaaagcatcagcatcctccaaattcatactacactttgcaatttgttgctgattttgattcatattacca |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42837954 |
ttgcatctccctaaatgatttcttattaattaaagcatcaacatcctccaaattcatactacactttgcaatttgttgctgattttgattcatattacca |
42837855 |
T |
|
| Q |
412 |
tctccgagactcagttcatcttgctgttgctgcagctgatgttgtgcagtttcaggcaattgtctcaagagacgg |
486 |
Q |
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| T |
42837854 |
tctccgagactcagttcatcttgctgttgctgcagctgatgttgtgcagtttcaggcaattgtctcaagagacgg |
42837780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 43913748 - 43913848
Alignment:
| Q |
138 |
cttattacatgctataaaggaaccagtccggcgtcgacaatcttcttttgttggtaagtcacaatatggtctcatctgagaaccacctttagttttgaac |
237 |
Q |
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|||||||||||||| ||||||||| ||| |||| ||||||||||||||||| |||||||||||||| || ||| ||||||||||||||||||||||||| |
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| T |
43913748 |
cttattacatgctacaaaggaaccggtctggcgccgacaatcttcttttgtcagtaagtcacaatattgtttcacctgagaaccacctttagttttgaac |
43913847 |
T |
|
| Q |
238 |
t |
238 |
Q |
| |
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| |
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|
| T |
43913848 |
t |
43913848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 43913471 - 43913552
Alignment:
| Q |
55 |
ttcatgtgccggcaagtacgaagaaaaggacagtctcccaaattaatgtcagtatgaagagcaatgattcgtctaaaatgaa |
136 |
Q |
| |
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| T |
43913471 |
ttcatgtgccggcaagtatctagaaaagaacagtctcccagattaatgtcagtgtgaagagcaatgattcgtctaaaatgaa |
43913552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 380 - 486
Target Start/End: Original strand, 43914408 - 43914508
Alignment:
| Q |
380 |
caatttgttgctgattttgattcatattaccatctccgagactcagttcatcttgctgttgctgcagctgatgttgtgcagtttcaggcaattgtctcaa |
479 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||| ||||| | ||||||| | ||||| |||||||||||||| |||| |||||| |
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| T |
43914408 |
caatttgttgctgattttgattcatattaccatctccaagactcgattcattt---tgttgct---gatgatgatgtgcagtttcaggaaattctctcaa |
43914501 |
T |
|
| Q |
480 |
gagacgg |
486 |
Q |
| |
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||||||| |
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| T |
43914502 |
gagacgg |
43914508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 43914035 - 43914092
Alignment:
| Q |
286 |
aaaagctccttagcagtttcatatttttgcatctccctaaatgatttcttattaatta |
343 |
Q |
| |
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|||||||||||| |||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
43914035 |
aaaagctccttaccagttttggatttttgcatctccctaaacgatttcttattaatta |
43914092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 43913328 - 43913369
Alignment:
| Q |
12 |
atcaggtgtagggtcttcctcataatgaacatatttacatgt |
53 |
Q |
| |
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||||||||||||||| | |||||| ||||||||||||||||| |
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| T |
43913328 |
atcaggtgtagggtcatactcatagtgaacatatttacatgt |
43913369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 8635071 - 8635122
Alignment:
| Q |
85 |
cagtctcccaaattaatgtcagtatgaagagcaatgattcgtctaaaatgaa |
136 |
Q |
| |
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|||||||| ||| ||| | |||||||||||| |||||||||||||||||||| |
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| T |
8635071 |
cagtctcctaaactaaagccagtatgaagagaaatgattcgtctaaaatgaa |
8635122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 138 - 238
Target Start/End: Complemental strand, 8623758 - 8623658
Alignment:
| Q |
138 |
cttattacatgctataaaggaaccagtccggcgtcgacaatcttcttttgttggtaagtcacaatatggtctcatctgagaaccacctttagttttgaac |
237 |
Q |
| |
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||||| |||||||| ||||||||| |||||||||||| || ||||||| | || ||||||| | | | |||| |||| | ||| |||||||||||||| |
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| T |
8623758 |
cttatcacatgctacaaaggaaccggtccggcgtcgataaacttctttcatcagtcagtcacagtgttgcctcacctgatatccatctttagttttgaac |
8623659 |
T |
|
| Q |
238 |
t |
238 |
Q |
| |
|
| |
|
|
| T |
8623658 |
t |
8623658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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