View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2484_low_3 (Length: 418)
Name: NF2484_low_3
Description: NF2484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2484_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 17 - 405
Target Start/End: Complemental strand, 4596066 - 4595678
Alignment:
| Q |
17 |
cagagattaaagggagaaaaatgattcgaatcataatttatatgataatatctgattcaaatcaaacatgtaaagttgaagatttaaagaatcattttga |
116 |
Q |
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| T |
4596066 |
cagagattaaagggagaaaaatgattcgaatcataatttatatggtaacatctgattcaaatcaaacatgtaaagttgaagatttaaagaatcattttga |
4595967 |
T |
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| Q |
117 |
cacaccaacttgttcccatatactttccaattgagtttttatgcagagtaattatttcagaatcatcataagtgcatatggcctagagtgaaagggtact |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4595966 |
cacaccaacttgttcccatatactttccaattgagtttttatgcagagtaattatttcagaatcatcataagtgcatatggcctagagtgaaagggtact |
4595867 |
T |
|
| Q |
217 |
ttgcaaatactataagacttcattcaaaacaatctaaaataaactaatcaaccctaaggagaaactttagtttgtcactatttttagataacaatttaaa |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4595866 |
ttgcaaatactataagacttcattcaaaacaatctaaaataaactaattaaccctaaggagaaactttagtttgtcactatttttagataacaatttaaa |
4595767 |
T |
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| Q |
317 |
ataaacgaactttttagatttgtactattcacatatcatttttatcattatttcatcgatacactcgcttttccccttcctttctcatt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
4595766 |
ataaacgaactttttagatttgtactattcacatatcatttttatcattatttcatcgatacactcacttttccccttcctctctcatt |
4595678 |
T |
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