View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2484_low_7 (Length: 290)

Name: NF2484_low_7
Description: NF2484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2484_low_7
NF2484_low_7
[»] chr6 (49 HSPs)
chr6 (6-272)||(2184985-2185251)
chr6 (6-272)||(2184375-2184641)
chr6 (9-90)||(27677630-27677711)
chr6 (9-90)||(27679036-27679117)
chr6 (9-88)||(27706420-27706499)
chr6 (9-90)||(27593036-27593117)
chr6 (6-90)||(26949748-26949832)
chr6 (6-58)||(26975139-26975191)
chr6 (6-65)||(26341975-26342034)
chr6 (9-67)||(26656079-26656137)
chr6 (9-67)||(26762050-26762108)
chr6 (10-59)||(26848751-26848800)
chr6 (10-59)||(27214508-27214557)
chr6 (10-59)||(27234671-27234720)
chr6 (6-59)||(28227037-28227090)
chr6 (9-65)||(25481832-25481888)
chr6 (9-65)||(25538630-25538686)
chr6 (9-65)||(25579809-25579865)
chr6 (9-65)||(26048935-26048991)
chr6 (9-65)||(26070104-26070160)
chr6 (9-65)||(26142955-26143011)
chr6 (9-49)||(26823930-26823970)
chr6 (7-67)||(28150025-28150085)
chr6 (6-90)||(28242891-28242975)
chr6 (9-48)||(26056016-26056055)
chr6 (9-48)||(26075986-26076025)
chr6 (6-48)||(25071746-25071788)
chr6 (17-67)||(26646577-26646627)
chr6 (17-67)||(26752545-26752595)
chr6 (6-48)||(28181201-28181243)
chr6 (6-48)||(28297771-28297813)
chr6 (6-48)||(28514260-28514302)
chr6 (9-130)||(27338041-27338162)
chr6 (9-130)||(27398781-27398902)
chr6 (9-90)||(27611018-27611099)
chr6 (9-90)||(27698510-27698591)
chr6 (9-90)||(27718395-27718476)
chr6 (6-47)||(28185453-28185494)
chr6 (6-47)||(28234651-28234692)
chr6 (6-58)||(26635777-26635829)
chr6 (6-58)||(26741743-26741795)
chr6 (9-40)||(26884253-26884284)
chr6 (11-90)||(27724861-27724940)
chr6 (10-40)||(26937185-26937215)
chr6 (11-48)||(26623068-26623105)
chr6 (11-48)||(26729046-26729083)
chr6 (9-54)||(27531249-27531294)
chr6 (6-58)||(26959253-26959305)
chr6 (10-54)||(27665169-27665213)
[»] scaffold0349 (2 HSPs)
scaffold0349 (9-88)||(3439-3518)
scaffold0349 (11-90)||(14372-14451)
[»] chr1 (3 HSPs)
chr1 (9-90)||(28164365-28164446)
chr1 (9-90)||(28127682-28127763)
chr1 (9-48)||(268402-268441)
[»] chr8 (1 HSPs)
chr8 (9-67)||(29273809-29273867)
[»] chr4 (6 HSPs)
chr4 (9-67)||(18679593-18679651)
chr4 (9-130)||(18731467-18731588)
chr4 (9-67)||(18655503-18655561)
chr4 (9-130)||(18699363-18699484)
chr4 (9-67)||(18724111-18724169)
chr4 (6-59)||(5091001-5091054)
[»] scaffold0038 (3 HSPs)
scaffold0038 (6-59)||(27535-27588)
scaffold0038 (6-90)||(43053-43137)
scaffold0038 (6-48)||(34812-34854)
[»] chr2 (2 HSPs)
chr2 (6-58)||(17993732-17993784)
chr2 (6-54)||(3279775-3279823)
[»] scaffold0277 (1 HSPs)
scaffold0277 (11-90)||(4687-4766)
[»] scaffold0019 (1 HSPs)
scaffold0019 (6-48)||(58340-58382)


Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 49)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 6 - 272
Target Start/End: Original strand, 2184985 - 2185251
Alignment:
6 gcttcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaagggacgcccggttctgccagttttctgtaacatagatccta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2184985 gcttcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaagggacgcccggttctgccagttttctgtaacatagatccta 2185084  T
106 gtcatgtacgacatcagactgggagcatcggtgaagaactggcaaagcatcaagagaagttccaaaagaatatgaaaaggctgcgggaatggaagatagc 205  Q
     |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
2185085 atcatgtacgaaatcagactgggagcatcggtgaagaactggcaaagcatcaagagaagttccaaaagaatatgaaaaggctgcgggaatggaagaaagc 2185184  T
206 tcttaaacaagcagctgatctttccggctaccacttcgatcttgctgggtacagcacttcattcttt 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
2185185 tcttaaacaagcagctgatctttccggctaccacttcgatcttgctgggtacaccacttcattcttt 2185251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 6 - 272
Target Start/End: Original strand, 2184375 - 2184641
Alignment:
6 gcttcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaagggacgcccggttctgccagttttctgtaacatagatccta 105  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||| |||||||||| | | || | |||||    
2184375 gcttcttcttcattttgtttggacgaacttgtccacatcattcgttactccaagtcaaagggacgcctggttctaccagttttctatgatattgctccta 2184474  T
106 gtcatgtacgacatcagactgggagcatcggtgaagaactggcaaagcatcaagagaagttccaaaagaatatgaaaaggctgcgggaatggaagatagc 205  Q
     |||||||||| | |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||    
2184475 ctcatgtacgaaagcagactgggagcatcggtgaagaacttgcgaagcatcaagagaagttccaaaagaatatggaaaggctgcaggaatggaagatggc 2184574  T
206 tcttaaacaagcagctgatctttccggctaccacttcgatcttgctgggtacagcacttcattcttt 272  Q
    ||||||| |||||||||| ||||||||| |||||||| ||||||| ||||||  |||||||||||||    
2184575 tcttaaagaagcagctgagctttccggccaccacttcaatcttgcggggtactccacttcattcttt 2184641  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 27677711 - 27677630
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaagggacgcccggttctgccagttttct 90  Q
    |||||||||||||||||||||||||||||||| |||||||  |||| |||| ||||||| ||||  |||||||| |||||||    
27677711 tcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgcctcgttctgcctgttttct 27677630  T

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Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 27679036 - 27679117
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaagggacgcccggttctgccagttttct 90  Q
    |||||||||||||||||||||||||||||||| |||||||  |||| |||| ||||||| ||||  |||||||| |||||||    
27679036 tcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgcctcgttctgcctgttttct 27679117  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 27706499 - 27706420
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaagggacgcccggttctgccagtttt 88  Q
    |||||||||||||||||||||||||||||||| |||||||  |||| |||| ||||||| ||||  |||||||| |||||    
27706499 tcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgcctcgttctgcctgtttt 27706420  T

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Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 27593117 - 27593036
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaagggacgcccggttctgccagttttct 90  Q
    |||||||| ||||||||||||||||||| ||| ||||||| ||||| |||| ||||||| ||||| ||| |||| |||||||    
27593117 tcttcttcgttttgtttggacgaacttgaccacatcattcattgctacaagacaaagggtcgccctgttttgcctgttttct 27593036  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 26949748 - 26949832
Alignment:
6 gcttcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaagggacgcccggttctgccagttttct 90  Q
    |||||||||||||||||||| ||||||||||||||||||||||  | || ||||  ||| || ||||  ||||||||||||||||    
26949748 gcttcttcttcattttgtttagacgaacttgtccatatcattcactacttcaaggaaaaaggtcgccttgttctgccagttttct 26949832  T

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Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 26975139 - 26975191
Alignment:
6 gcttcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaa 58  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||| |||||    
26975139 gcttcttcttcattttgtttggacgaacttgtccacatcattcattgttccaa 26975191  T

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Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 26342034 - 26341975
Alignment:
6 gcttcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaag 65  Q
    ||||||||||| ||||||||||||||||||||||| ||||||| ||||| |||| |||||    
26342034 gcttcttcttcgttttgtttggacgaacttgtccacatcattcattgcttcaaggcaaag 26341975  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 26656079 - 26656137
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaaggg 67  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||  ||| |||||||    
26656079 tcttcttcattttgtttggacgaacttgtccacatcattcattgctataagacaaaggg 26656137  T

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Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 26762050 - 26762108
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaaggg 67  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||  ||| |||||||    
26762050 tcttcttcattttgtttggacgaacttgtccacatcattcattgctataagacaaaggg 26762108  T

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Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 26848751 - 26848800
Alignment:
10 cttcttcattttgtttggacgaacttgtccatatcattcgttgctccaag 59  Q
    ||||||| ||||||||||||||||||||||| ||||||| ||||||||||    
26848751 cttcttcgttttgtttggacgaacttgtccacatcattcattgctccaag 26848800  T

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Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 27214508 - 27214557
Alignment:
10 cttcttcattttgtttggacgaacttgtccatatcattcgttgctccaag 59  Q
    ||||||||||||||||||||||||||||||| |||| || ||||||||||    
27214508 cttcttcattttgtttggacgaacttgtccacatcactcattgctccaag 27214557  T

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Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 27234720 - 27234671
Alignment:
10 cttcttcattttgtttggacgaacttgtccatatcattcgttgctccaag 59  Q
    ||||||||||||||||||||||||||||||| |||| || ||||||||||    
27234720 cttcttcattttgtttggacgaacttgtccacatcactcattgctccaag 27234671  T

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Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 28227037 - 28227090
Alignment:
6 gcttcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaag 59  Q
    ||||||||||||||||| ||||||||||||||||| ||||||| ||||| ||||    
28227037 gcttcttcttcattttgcttggacgaacttgtccacatcattcattgcttcaag 28227090  T

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Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 25481832 - 25481888
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaag 65  Q
    |||||||||||||||||||||||||||||||| |||||||  |||| |||| |||||    
25481832 tcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaag 25481888  T

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Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 25538630 - 25538686
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaag 65  Q
    |||||||||||||||||||||||||||||||| |||||||  |||| |||| |||||    
25538630 tcttcttcattttgtttggacgaacttgtccagatcattcactgctacaagacaaag 25538686  T

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Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 25579809 - 25579865
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaag 65  Q
    |||||||||||||||||||||||||||||||| |||||||  |||| |||| |||||    
25579809 tcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaag 25579865  T

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Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 26048935 - 26048991
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaag 65  Q
    |||||||||||||||||||||||||||||||| |||||||  |||| |||| |||||    
26048935 tcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaag 26048991  T

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Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 26070104 - 26070160
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaag 65  Q
    |||||||||||||||||||||||||||||||| |||||||  |||| |||| |||||    
26070104 tcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaag 26070160  T

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Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 26142955 - 26143011
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaag 65  Q
    |||||||||||||||||||||||||||||||| |||||||  |||| |||| |||||    
26142955 tcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaag 26143011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 26823930 - 26823970
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcg 49  Q
    |||||||||||||||||||||||||||||||| ||||||||    
26823930 tcttcttcattttgtttggacgaacttgtccacatcattcg 26823970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 28150025 - 28150085
Alignment:
7 cttcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaaggg 67  Q
    |||||||||||||||||||||||||||||||||| || ||||  |||| |||| |||||||    
28150025 cttcttcttcattttgtttggacgaacttgtccacattattcactgcttcaaggcaaaggg 28150085  T

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Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 28242891 - 28242975
Alignment:
6 gcttcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaagggacgcccggttctgccagttttct 90  Q
    ||||||||||||||||| ||||||||||||||||| |||||||  |||| ||||  ||| |||||||  ||| ||||| ||||||    
28242891 gcttcttcttcattttgcttggacgaacttgtccacatcattcactgctgcaagaaaaatggacgcctagttttgccaattttct 28242975  T

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Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 26056016 - 26056055
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattc 48  Q
    |||||||||||||||||||||||||||||||| |||||||    
26056016 tcttcttcattttgtttggacgaacttgtccacatcattc 26056055  T

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Target: chr6; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 26075986 - 26076025
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattc 48  Q
    |||||||||||||||||||||||||||||||| |||||||    
26075986 tcttcttcattttgtttggacgaacttgtccacatcattc 26076025  T

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Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 25071746 - 25071788
Alignment:
6 gcttcttcttcattttgtttggacgaacttgtccatatcattc 48  Q
    |||||||||||||||||||| |||||||||||||| |||||||    
25071746 gcttcttcttcattttgtttagacgaacttgtccacatcattc 25071788  T

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Target: chr6; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 26646577 - 26646627
Alignment:
17 attttgtttggacgaacttgtccatatcattcgttgctccaagtcaaaggg 67  Q
    |||||||||||||||||||||||| ||||||| ||||| |||| |||||||    
26646577 attttgtttggacgaacttgtccacatcattcattgctacaagacaaaggg 26646627  T

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Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 26752545 - 26752595
Alignment:
17 attttgtttggacgaacttgtccatatcattcgttgctccaagtcaaaggg 67  Q
    |||||||||||||||||||||||| ||||||| ||||| |||| |||||||    
26752545 attttgtttggacgaacttgtccacatcattcattgctacaagacaaaggg 26752595  T

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Target: chr6; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 28181201 - 28181243
Alignment:
6 gcttcttcttcattttgtttggacgaacttgtccatatcattc 48  Q
    ||||||||||||||||| ||||||||||||||||| |||||||    
28181201 gcttcttcttcattttgcttggacgaacttgtccacatcattc 28181243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 28297813 - 28297771
Alignment:
6 gcttcttcttcattttgtttggacgaacttgtccatatcattc 48  Q
    ||||||||||||||||| ||||||||||||||||| |||||||    
28297813 gcttcttcttcattttgcttggacgaacttgtccacatcattc 28297771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 28514260 - 28514302
Alignment:
6 gcttcttcttcattttgtttggacgaacttgtccatatcattc 48  Q
    ||||||||||||||||| ||||||||||||||||| |||||||    
28514260 gcttcttcttcattttgcttggacgaacttgtccacatcattc 28514302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 27338162 - 27338041
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaagggacgcccggttctgccagttttctgtaacatagatcctagtc 108  Q
    |||||||||||||| ||||||||||||||||| |||||||  |||| |||| ||| |||  |  ||||| |||| ||||||| |      ||||||| ||    
27338162 tcttcttcattttgcttggacgaacttgtccacatcattcactgctacaagacaaggggttgttcggttttgcctgttttctatggtgcggatcctactc 27338063  T
109 atgtacgacatcagactgggag 130  Q
    | ||||||||||||||||||||    
27338062 acgtacgacatcagactgggag 27338041  T

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Target: chr6; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 27398902 - 27398781
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaagggacgcccggttctgccagttttctgtaacatagatcctagtc 108  Q
    |||||||||||||| ||||||||||||||||| |||||||  |||| |||| ||| |||  |  ||||| |||| ||||||| |      ||||||| ||    
27398902 tcttcttcattttgcttggacgaacttgtccacatcattcactgctacaagacaaggggttgttcggttttgcctgttttctatggtgcggatcctactc 27398803  T
109 atgtacgacatcagactgggag 130  Q
    | ||||||||||||||||||||    
27398802 acgtacgacatcagactgggag 27398781  T

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Target: chr6; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 27611099 - 27611018
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaagggacgcccggttctgccagttttct 90  Q
    |||||||| ||||||||||||||||||||||| || ||||  |||| |||| ||||||| ||||  ||| |||| |||||||    
27611099 tcttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagggtcgcctcgttttgcctgttttct 27611018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 27698591 - 27698510
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaagggacgcccggttctgccagttttct 90  Q
    |||||||||||||||||||||||||||||||| || ||||  |||| | || ||||||| ||||  ||| |||| |||||||    
27698591 tcttcttcattttgtttggacgaacttgtccacataattcactgctacgagacaaagggtcgcctcgttttgcctgttttct 27698510  T

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Target: chr6; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 27718476 - 27718395
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaagggacgcccggttctgccagttttct 90  Q
    |||||||| ||||||||||||||||||||||| || ||||  |||| |||| ||||||| ||||  ||| |||| |||||||    
27718476 tcttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagggtcgcctcgttttgcctgttttct 27718395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 28185453 - 28185494
Alignment:
6 gcttcttcttcattttgtttggacgaacttgtccatatcatt 47  Q
    ||||||||||||||||| ||||||||||||||||| ||||||    
28185453 gcttcttcttcattttgcttggacgaacttgtccacatcatt 28185494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 28234651 - 28234692
Alignment:
6 gcttcttcttcattttgtttggacgaacttgtccatatcatt 47  Q
    ||||||||||||||||| ||||||||||||||||| ||||||    
28234651 gcttcttcttcattttgcttggacgaacttgtccacatcatt 28234692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 26635777 - 26635829
Alignment:
6 gcttcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaa 58  Q
    ||||||||||  ||||||||||| ||||||||||| ||||||| |||||||||    
26635777 gcttcttctttgttttgtttggatgaacttgtccacatcattcattgctccaa 26635829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 26741743 - 26741795
Alignment:
6 gcttcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaa 58  Q
    ||||||||||  ||||||||||| ||||||||||| ||||||| |||||||||    
26741743 gcttcttctttgttttgtttggatgaacttgtccacatcattcattgctccaa 26741795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 26884253 - 26884284
Alignment:
9 tcttcttcattttgtttggacgaacttgtcca 40  Q
    ||||||||||||||||||||||||||||||||    
26884253 tcttcttcattttgtttggacgaacttgtcca 26884284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 27724940 - 27724861
Alignment:
11 ttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaagggacgcccggttctgccagttttct 90  Q
    |||||| ||||||||||||||||||||||| || ||||  |||| |||| ||||||| ||||  ||| |||| |||||||    
27724940 ttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagggtcgcctcgttttgcctgttttct 27724861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 40
Target Start/End: Original strand, 26937185 - 26937215
Alignment:
10 cttcttcattttgtttggacgaacttgtcca 40  Q
    |||||||||||||||||||||||||||||||    
26937185 cttcttcattttgtttggacgaacttgtcca 26937215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 26623068 - 26623105
Alignment:
11 ttcttcattttgtttggacgaacttgtccatatcattc 48  Q
    |||||||||||||||||| ||||||||||| |||||||    
26623068 ttcttcattttgtttggatgaacttgtccacatcattc 26623105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 26729046 - 26729083
Alignment:
11 ttcttcattttgtttggacgaacttgtccatatcattc 48  Q
    |||||||||||||||||| ||||||||||| |||||||    
26729046 ttcttcattttgtttggatgaacttgtccacatcattc 26729083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 54
Target Start/End: Complemental strand, 27531294 - 27531249
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgct 54  Q
    ||||||||||||||||||||||||||||| || |||| || |||||    
27531294 tcttcttcattttgtttggacgaacttgttcacatcactcattgct 27531249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 58
Target Start/End: Original strand, 26959253 - 26959305
Alignment:
6 gcttcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaa 58  Q
    ||||||||||| |||| |||||| ||||||||||| ||||||| || ||||||    
26959253 gcttcttcttcgttttatttggatgaacttgtccacatcattcatttctccaa 26959305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 27665213 - 27665169
Alignment:
10 cttcttcattttgtttggacgaacttgtccatatcattcgttgct 54  Q
    |||||||||||||||| || ||||||||||| ||||||| |||||    
27665213 cttcttcattttgtttagatgaacttgtccacatcattcattgct 27665169  T

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Target: scaffold0349 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 3518 - 3439
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaagggacgcccggttctgccagtttt 88  Q
    |||||||||||||||||||||||||||||||| |||||||  |||| |||| ||||||| ||||  |||||||| |||||    
3518 tcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgcctcgttctgcctgtttt 3439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 14451 - 14372
Alignment:
11 ttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaagggacgcccggttctgccagttttct 90  Q
    |||||| ||||||||||||||||||||||| || ||||  |||| |||| ||||||| ||||  ||| |||| |||||||    
14451 ttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagggtcgcctcgttttgcctgttttct 14372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 28164446 - 28164365
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaagggacgcccggttctgccagttttct 90  Q
    |||||||||||||||||||||||||||||||| |||||||  |||| |||| ||||||| ||||  ||| |||| |||||||    
28164446 tcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaagggtcgcctagttttgcctgttttct 28164365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 28127763 - 28127682
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaagggacgcccggttctgccagttttct 90  Q
    ||||||||||||||||||||||||||||| || |||||||  |||| |||| ||||||| ||||  ||| |||| |||||||    
28127763 tcttcttcattttgtttggacgaacttgtgcacatcattcactgctacaagacaaagggtcgcctagttttgcctgttttct 28127682  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 268441 - 268402
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattc 48  Q
    |||||||||||||||||||||||||||||||| |||||||    
268441 tcttcttcattttgtttggacgaacttgtccacatcattc 268402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 29273867 - 29273809
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaaggg 67  Q
    |||||||||||||||||||||||||||||||| |||||||  |||| |||| |||||||    
29273867 tcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaaggg 29273809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 18679651 - 18679593
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaaggg 67  Q
    |||||||||||||||||||||||||||||||| |||||||  |||| |||| |||||||    
18679651 tcttcttcattttgtttggacgaacttgtccacatcattcactgctacaagacaaaggg 18679593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 18731588 - 18731467
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaagggacgcccggttctgccagttttctgtaacatagatcctagtc 108  Q
    |||||||||||||||||||||||||||||||| ||||| |  |||| |||| ||||||| || |  ||| |||| ||||||| |  | | ||||||||||    
18731588 tcttcttcattttgtttggacgaacttgtccacatcatgcactgctacaagacaaagggtcgtcttgttttgcctgttttctatggcgtggatcctagtc 18731489  T
109 atgtacgacatcagactgggag 130  Q
    |  |||||||||| | ||||||    
18731488 acatacgacatcaaagtgggag 18731467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 18655561 - 18655503
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaaggg 67  Q
    |||||||||||||||||||||||||||||||  |||||||  |||| |||| |||||||    
18655561 tcttcttcattttgtttggacgaacttgtccgcatcattcactgctacaagacaaaggg 18655503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 18699484 - 18699363
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaagggacgcccggttctgccagttttctgtaacatagatcctagtc 108  Q
    ||||||||||||||||||||||||||||| || |||||||  |||| |||| |||| || || |  ||| |||| ||||||| |  | ||||||||| ||    
18699484 tcttcttcattttgtttggacgaacttgttcacatcattcactgctacaagacaaaaggtcgtctcgttttgcctgttttctatggcgtagatcctactc 18699385  T
109 atgtacgacatcagactgggag 130  Q
    |  |||||||||| | ||||||    
18699384 acatacgacatcaaagtgggag 18699363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 18724169 - 18724111
Alignment:
9 tcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaaggg 67  Q
    |||||||||||||||||| ||||||||||||| ||||| |  |||| |||| |||||||    
18724169 tcttcttcattttgtttgaacgaacttgtccacatcatgcactgctacaagacaaaggg 18724111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 5091054 - 5091001
Alignment:
6 gcttcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaag 59  Q
    ||||||||||| |||||||| || |||||||||||||| ||||  |||||||||    
5091054 gcttcttcttcgttttgtttagatgaacttgtccatattattcactgctccaag 5091001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 27535 - 27588
Alignment:
6 gcttcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaag 59  Q
    ||||||||||||||||| ||||||||||||||||| ||||||| ||||| ||||    
27535 gcttcttcttcattttgcttggacgaacttgtccacatcattcattgcttcaag 27588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 43053 - 43137
Alignment:
6 gcttcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaagggacgcccggttctgccagttttct 90  Q
    ||||||||||||||||| ||||||||||||||||| |||||||  |||| ||||  ||| |||||||  ||| ||||| ||||||    
43053 gcttcttcttcattttgcttggacgaacttgtccacatcattcactgctgcaagaaaaatggacgcctagttttgccaattttct 43137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 34812 - 34854
Alignment:
6 gcttcttcttcattttgtttggacgaacttgtccatatcattc 48  Q
    ||||||||||||||||| ||||||||||||||||| |||||||    
34812 gcttcttcttcattttgcttggacgaacttgtccacatcattc 34854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 17993784 - 17993732
Alignment:
6 gcttcttcttcattttgtttggacgaacttgtccatatcattcgttgctccaa 58  Q
    |||||||||||||||||||| |||||||||||||| |||||||  ||||||||    
17993784 gcttcttcttcattttgtttagacgaacttgtccacatcattcaatgctccaa 17993732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 3279775 - 3279823
Alignment:
6 gcttcttcttcattttgtttggacgaacttgtccatatcattcgttgct 54  Q
    |||||||||  |||||||||||||||||||||||| ||||||| |||||    
3279775 gcttcttctatattttgtttggacgaacttgtccacatcattcattgct 3279823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 4766 - 4687
Alignment:
11 ttcttcattttgtttggacgaacttgtccatatcattcgttgctccaagtcaaagggacgcccggttctgccagttttct 90  Q
    |||||| ||||||||||||||||||||||| || ||||  |||| |||| ||||||| ||||  ||| |||| |||||||    
4766 ttcttcgttttgtttggacgaacttgtccacataattcactgctacaagacaaagggtcgcctcgttttgcctgttttct 4687  T

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Target: scaffold0019 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 58382 - 58340
Alignment:
6 gcttcttcttcattttgtttggacgaacttgtccatatcattc 48  Q
    ||||||||||||||||| ||| ||||||||||||| |||||||    
58382 gcttcttcttcattttgcttgaacgaacttgtccacatcattc 58340  T

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