View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2485_high_1 (Length: 763)
Name: NF2485_high_1
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2485_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 14 - 496
Target Start/End: Complemental strand, 47005223 - 47004746
Alignment:
| Q |
14 |
aatttgatggtaaaaggattataccactgtgtcatcctatatcacatttttcatgtgaaacttcatgtatatggatggctccnnnnnnngttcacagtag |
113 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
47005223 |
aatttgatggtaaaaggattataccactgtgtcattctatatcacatttttcatgtgaaacttcatgtatatggatggctccaaaaaaagttcacagtag |
47005124 |
T |
|
| Q |
114 |
atgaatttgtgatctgtctggatgaaagtttttatagatnnnnnnnnnnnnnnnnnnnnn-tgtttgtcttctgaaactaaggaattcgttgtgtagtaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
47005123 |
atgaatttgtgatctgtctggatgaaagtttttatagataaaaaaaaaattaaaattaaaatgtttgtcttctgaaactaaggaattcgttgtgtagtaa |
47005024 |
T |
|
| Q |
213 |
aaataatttatcactcaatacagtaacttaaatataacaagttaaattgaatattagtatctttgatatatgaatttgcaagtattttatttgtgtgttt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47005023 |
aaataatttatcactcaatacagtaacttaaatataataagttaaattgaatattagtatctttgatatatgaatttgcaagtattttatttgtgtgttt |
47004924 |
T |
|
| Q |
313 |
ggatgaatctatgataataaaatacaaacatggaagagtgtgaagacgccagcttgggagctcttaacgttttctgcaacttgacac---cttcacaaga |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47004923 |
ggatgaatctatgataataaaatacaaacatggaagagtgtgaagacgccagcttgggagctcttaacgttttctgcaacttgacaccttcttcacaaga |
47004824 |
T |
|
| Q |
410 |
aaactaatgccaatcgtttaagattacacaatatacacacatcacatcattattcattagtattactaaccgcaatcatatacactc |
496 |
Q |
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| T |
47004823 |
aaactaatgccaatagtttaagat---------tacacacatcacatcattattcattagtattactaaccgcaatcatatacactc |
47004746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 549 - 753
Target Start/End: Complemental strand, 47004699 - 47004495
Alignment:
| Q |
549 |
gtaataatataacataagtcaaaactcctactttttataaccttaaagcatctgtgtggcttagttcttgcttcagagttctgagtttataatatcatga |
648 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47004699 |
gtaataatataacataagtcaaaactcctactttttataaccttaaagcatctgtgtggcttagttcttgcttcagagttctgagtttataatatcatga |
47004600 |
T |
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| Q |
649 |
agaataagtttaaagatttttctcgtctactttcttccattcgcgaagaagctagttctgtaccaactagtattcttatacttaccacccttgctgctgt |
748 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47004599 |
agaataagtttaaagatttttctcgtctactttcttccattcgcgaagaagctagttctgtaccaactagtattcttatacttaccacccttgctgctgt |
47004500 |
T |
|
| Q |
749 |
ctctg |
753 |
Q |
| |
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||||| |
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|
| T |
47004499 |
ctctg |
47004495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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