View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2485_high_14 (Length: 435)
Name: NF2485_high_14
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2485_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 46292078 - 46292255
Alignment:
| Q |
19 |
tcttacacttccttcaaaggaaaaatagatcttacactgtgtttgtgtata----------gatttatttataaaagagaggaataaaattaaaaaaga- |
107 |
Q |
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| T |
46292078 |
tcttacacttccttcaaaggaaaaatagatcttacactgtgtttgtatataactatatatagatttatttataaaagagaggaataaaatttaaaaaaaa |
46292177 |
T |
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| Q |
108 |
----tgtattttctcatgaggcgggacagaactggatcacctccactccaactacataagtgcaaccatgtggttttt |
181 |
Q |
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| T |
46292178 |
aaattgtattttctcatgaggcgggacagaactggatcacctccactccaactacataagtgcaaccatgtggttttt |
46292255 |
T |
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Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 277 - 364
Target Start/End: Original strand, 46292352 - 46292439
Alignment:
| Q |
277 |
gatctagacgagacttatagcgagaatgaacatgacatttgtgatccttcatactaacttgttgttcaatatagaagatgattccctc |
364 |
Q |
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| T |
46292352 |
gatctagacgagacttatagcgagaatgaacatgacatttgtgatccttcatactaacttgttgttcaatatagaagatgattccctc |
46292439 |
T |
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