View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2485_high_16 (Length: 413)

Name: NF2485_high_16
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2485_high_16
NF2485_high_16
[»] chr5 (9 HSPs)
chr5 (258-403)||(41900181-41900326)
chr5 (171-369)||(32268817-32269021)
chr5 (88-161)||(32250396-32250470)
chr5 (88-150)||(32255881-32255943)
chr5 (88-161)||(32264927-32265000)
chr5 (344-400)||(32268762-32268818)
chr5 (51-86)||(32264762-32264797)
chr5 (268-308)||(41886296-41886336)
chr5 (51-87)||(32255711-32255747)
[»] chr4 (8 HSPs)
chr4 (88-161)||(28719574-28719647)
chr4 (332-395)||(6007662-6007725)
chr4 (327-392)||(55907434-55907499)
chr4 (268-316)||(1488824-1488872)
chr4 (333-388)||(2525761-2525816)
chr4 (267-312)||(1537250-1537295)
chr4 (328-393)||(2168015-2168080)
chr4 (331-375)||(2625367-2625411)
[»] chr1 (3 HSPs)
chr1 (19-87)||(23203478-23203547)
chr1 (88-161)||(23204849-23204922)
chr1 (327-395)||(33161430-33161498)
[»] chr7 (4 HSPs)
chr7 (325-399)||(15091347-15091421)
chr7 (327-386)||(10168806-10168865)
chr7 (327-386)||(10176331-10176390)
chr7 (264-305)||(10616209-10616250)
[»] chr3 (2 HSPs)
chr3 (325-395)||(513426-513496)
chr3 (268-310)||(51120330-51120372)
[»] chr2 (2 HSPs)
chr2 (327-392)||(1036176-1036241)
chr2 (268-316)||(45244526-45244574)
[»] chr8 (2 HSPs)
chr8 (327-390)||(32152208-32152271)
chr8 (268-313)||(17642614-17642659)
[»] chr6 (1 HSPs)
chr6 (334-395)||(6395772-6395833)


Alignment Details
Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 258 - 403
Target Start/End: Original strand, 41900181 - 41900326
Alignment:
Q  258 ttctggttcatatttaccagatgagtgttgcgaatgtgtcttcaaattcctcaacgacgacaatgtatgcttgaaatctctctcactcgtctccaaacag 357  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||   | |||||||||||||||||||||||||||||||    
T  41900181 ttctggttcatatttaccagatgagtgttgggaatgtgtcttcaaattcctcaaagacgataatcactacttgaaatctctctcactcgtctccaaacag 41900280  T
Q  358 ttgctctccatctccaacaatcttcgattctctctcacagtctgtg 403  Q
    || ||||||||| |||||| ||||||||||||||| ||| ||||||    
T  41900281 tttctctccatcaccaacactcttcgattctctcttacaatctgtg 41900326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 171 - 369
Target Start/End: Complemental strand, 32269021 - 32268817
Alignment:
Q  171 cactcatctggcaactatgaagtccactcaaacaaaaagaagaagtagaacat-------cagtgatgcaaaaagaagaa---aatcaatgatatatttc 260  Q
    ||||||||||  ||||||| ||||||||   |||||||||||||| |||||||       ||||||||||||||||||||   ||||||||||    |||    
T  32269021 cactcatctgctaactatggagtccacttcgacaaaaagaagaagaagaacattgcggtccagtgatgcaaaaagaagaagaaaatcaatgat----ttc 32268926  T
Q  261 tggttcatatttaccagatgagtgttgcgaatgtgtcttcaaattcctcaacgacgacaatgtatgcttgaaatctctctcactcgtctccaaacagttg 360  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| | || ||| |||||  ||||||||||||||||||  ||||||||||||||||     
T  32268925 tggttcatatttaccagatgagtgttgggaatgtgtcttcaaattcttgaaagacaacaatcgatgcttgaaatctctctccatcgtctccaaacagtta 32268826  T
Q  361 ctctccatc 369  Q
    |||||||||    
T  32268825 ctctccatc 32268817  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 32250396 - 32250470
Alignment:
Q  88 aatatgattaattgggctctca-gagacaaacaagagttcattgatatggttgaaactgtcttccgtggtgcaag 161  Q
    |||||||||||||||||||| | ||||||||||||||||| ||||||  ||||||||||||||||||||| ||||    
T  32250396 aatatgattaattgggctctgaagagacaaacaagagttcgttgataccgttgaaactgtcttccgtggttcaag 32250470  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 88 - 150
Target Start/End: Original strand, 32255881 - 32255943
Alignment:
Q  88 aatatgattaattgggctctcagagacaaacaagagttcattgatatggttgaaactgtcttc 150  Q
    |||| ||||||||||| |||||||||||||||||||||| ||||||  |||||||||||||||    
T  32255881 aataagattaattgggttctcagagacaaacaagagttcgttgataccgttgaaactgtcttc 32255943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 32264927 - 32265000
Alignment:
Q  88 aatatgattaattgggctctcagagacaaacaagagttcattgatatggttgaaactgtcttccgtggtgcaag 161  Q
    |||| ||||||||||| | |||||||||||||||||||| ||||||  ||||||||||||||| | ||||||||    
T  32264927 aataagattaattgggttatcagagacaaacaagagttcgttgataccgttgaaactgtcttctgcggtgcaag 32265000  T

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Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 400
Target Start/End: Complemental strand, 32268818 - 32268762
Alignment:
Q  344 tcgtctccaaacagttgctctccatctccaacaatcttcgattctctctcacagtct 400  Q
    |||||||||||||||| ||||||||| |||||  |||||||||||||||||||||||    
T  32268818 tcgtctccaaacagttactctccatcaccaaccgtcttcgattctctctcacagtct 32268762  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 86
Target Start/End: Original strand, 32264762 - 32264797
Alignment:
Q  51 gataaaattataagatgcaaataattgcaagtaact 86  Q
    ||||||||||||||||||||||||||||||||||||    
T  32264762 gataaaattataagatgcaaataattgcaagtaact 32264797  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 41886296 - 41886336
Alignment:
Q  268 tatttaccagatgagtgttgcgaatgtgtcttcaaattcct 308  Q
    |||||||| ||||||||||| ||||||||||||||||||||    
T  41886296 tatttacctgatgagtgttgggaatgtgtcttcaaattcct 41886336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 32255711 - 32255747
Alignment:
Q  51 gataaaattataagatgcaaataattgcaagtaacta 87  Q
    |||||||||||| ||||||| ||||||||||||||||    
T  32255711 gataaaattatatgatgcaagtaattgcaagtaacta 32255747  T

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Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 28719574 - 28719647
Alignment:
Q  88 aatatgattaattgggctctcagagacaaacaagagttcattgatatggttgaaactgtcttccgtggtgcaag 161  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  28719574 aataagattaattgggctctcagagacaaacaagagttcattgatatcgttgaaactgtcttccatggtgcaag 28719647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 332 - 395
Target Start/End: Complemental strand, 6007725 - 6007662
Alignment:
Q  332 aatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctctctcac 395  Q
    |||||||||| |||||||| |||||||| ||||||||| |||||| ||| ||||||||||||||    
T  6007725 aatctctctccctcgtctcgaaacagttcctctccatcaccaacagtctccgattctctctcac 6007662  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 392
Target Start/End: Original strand, 55907434 - 55907499
Alignment:
Q  327 cttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctctct 392  Q
    ||||||||||||||||  ||||||||||||||| |||||  || |||||| |||||||||||||||    
T  55907434 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 55907499  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 1488824 - 1488872
Alignment:
Q  268 tatttaccagatgagtgttgcgaatgtgtcttcaaattcctcaacgacg 316  Q
    |||||||| |||||||| || ||||||||| ||||||||||||||||||    
T  1488824 tatttacctgatgagtgctgggaatgtgtcgtcaaattcctcaacgacg 1488872  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 388
Target Start/End: Complemental strand, 2525816 - 2525761
Alignment:
Q  333 atctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattct 388  Q
    ||||||||| |||||||| |||||||| || |||||| |||||| |||||||||||    
T  2525816 atctctctccctcgtctcaaaacagtttctgtccatcaccaacagtcttcgattct 2525761  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 1537250 - 1537295
Alignment:
Q  267 atatttaccagatgagtgttgcgaatgtgtcttcaaattcctcaac 312  Q
    ||||||||| ||||||||||| |||||||| |||| ||||||||||    
T  1537250 atatttacctgatgagtgttgggaatgtgtattcagattcctcaac 1537295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 393
Target Start/End: Complemental strand, 2168080 - 2168015
Alignment:
Q  328 ttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctctctc 393  Q
    ||||| ||||||||| | |||||||| ||||| || |||||| |||| | ||||||||||||||||    
T  2168080 ttgaagtctctctcagttgtctccaagcagtttctgtccatcaccaatagtcttcgattctctctc 2168015  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 375
Target Start/End: Original strand, 2625367 - 2625411
Alignment:
Q  331 aaatctctctcactcgtctccaaacagttgctctccatctccaac 375  Q
    ||||||||||| || ||||||||||| || |||||||||||||||    
T  2625367 aaatctctctcgctagtctccaaacattttctctccatctccaac 2625411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 23203478 - 23203547
Alignment:
Q  19 catacaatggaagggaccagctacacatacttgataaaattat-aagatgcaaataattgcaagtaacta 87  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23203478 catacaatggaagggaccagctacacatacttgataaaattataaagatgcaaataattgcaagtaacta 23203547  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 23204849 - 23204922
Alignment:
Q  88 aatatgattaattgggctctcagagacaaacaagagttcattgatatggttgaaactgtcttccgtggtgcaag 161  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||    
T  23204849 aatatgattaattggactctcagagacgaacaagagttcattgatatggttgaaactgtcttctgtggtgcaag 23204922  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 395
Target Start/End: Complemental strand, 33161498 - 33161430
Alignment:
Q  327 cttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctctctcac 395  Q
    |||||| ||||| || ||||||||||||||||| ||||||||| | || | |||||||||||| |||||    
T  33161498 cttgaattctctatccctcgtctccaaacagtttctctccatcactaatagtcttcgattctcactcac 33161430  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 15091347 - 15091421
Alignment:
Q  325 tgcttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctctctcacagtc 399  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||| |||||| ||||| ||| ||||||| ||||    
T  15091347 tgcttgaattctctctccctcgtctccaaacagttcctctccatcaccaacagtcttctattttctctcagagtc 15091421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 386
Target Start/End: Original strand, 10168806 - 10168865
Alignment:
Q  327 cttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgatt 386  Q
    |||||| ||||| || || |||||||||||||| ||||||||| |||||| |||||||||    
T  10168806 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgatt 10168865  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 386
Target Start/End: Original strand, 10176331 - 10176390
Alignment:
Q  327 cttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgatt 386  Q
    |||||| ||||| || || |||||||||||||| ||||||||| |||||| |||||||||    
T  10176331 cttgaattctctatcccttgtctccaaacagttcctctccatcaccaacactcttcgatt 10176390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 305
Target Start/End: Complemental strand, 10616250 - 10616209
Alignment:
Q  264 ttcatatttaccagatgagtgttgcgaatgtgtcttcaaatt 305  Q
    |||||||||||| ||||||||||| |||||| ||||||||||    
T  10616250 ttcatatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 395
Target Start/End: Original strand, 513426 - 513496
Alignment:
Q  325 tgcttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctctctcac 395  Q
    |||||||||||||||||   |||||| |||||||| ||||||||| |||||||||| ||||||||||||||    
T  513426 tgcttgaaatctctctccgccgtctcaaaacagttactctccatcaccaacaatctccgattctctctcac 513496  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 310
Target Start/End: Original strand, 51120330 - 51120372
Alignment:
Q  268 tatttaccagatgagtgttgcgaatgtgtcttcaaattcctca 310  Q
    |||||||| ||||| ||||| ||||||||||||||||||||||    
T  51120330 tatttacctgatgactgttgggaatgtgtcttcaaattcctca 51120372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 327 - 392
Target Start/End: Original strand, 1036176 - 1036241
Alignment:
Q  327 cttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctctct 392  Q
    ||||||||||||||||  ||||||||||||||| |||||  || |||||| |||||||||||||||    
T  1036176 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 1036241  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 45244526 - 45244574
Alignment:
Q  268 tatttaccagatgagtgttgcgaatgtgtcttcaaattcctcaacgacg 316  Q
    |||||||| ||||||||||| ||||||||||| ||||||||||||||||    
T  45244526 tatttacctgatgagtgttgggaatgtgtcttgaaattcctcaacgacg 45244574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 327 - 390
Target Start/End: Complemental strand, 32152271 - 32152208
Alignment:
Q  327 cttgaaatctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctct 390  Q
    |||||| || ||||| ||||||||||||||||| ||||||||| |||||| ||| |||||||||    
T  32152271 cttgaattcactctccctcgtctccaaacagttcctctccatcaccaacagtctccgattctct 32152208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 17642614 - 17642659
Alignment:
Q  268 tatttaccagatgagtgttgcgaatgtgtcttcaaattcctcaacg 313  Q
    |||||||| ||||||||||| || | ||||||||||||||||||||    
T  17642614 tatttacctgatgagtgttgggagtctgtcttcaaattcctcaacg 17642659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 395
Target Start/End: Complemental strand, 6395833 - 6395772
Alignment:
Q  334 tctctctcactcgtctccaaacagttgctctccatctccaacaatcttcgattctctctcac 395  Q
    |||||||| ||||||||||| ||||| ||||||||| ||||  |||||||||| || |||||    
T  6395833 tctctctccctcgtctccaagcagttcctctccatcaccaatcatcttcgattttcactcac 6395772  T

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