View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2485_high_18 (Length: 394)
Name: NF2485_high_18
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2485_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 129 - 285
Target Start/End: Complemental strand, 4703023 - 4702867
Alignment:
| Q |
129 |
tatgaccccaacaagttaccatctttgatcttagtgtttatgatatcttggcaggatccatactcctttaaggagacgatgttcaaataatgtaactgac |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4703023 |
tatgaccccaacaagttaccatctttgatcttagtgtttatgatatcttggcaggatccatactcctttaaggagacgatgttcaaataatgtaactgac |
4702924 |
T |
|
| Q |
229 |
cgaatgtattgaccccacaccaaattttttgcatcatagagtgtcccacaagtatct |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4702923 |
cgaatgtattgaccccacaccaaattttttgcatcatagagtgtcccacaagtatct |
4702867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 129 - 378
Target Start/End: Complemental strand, 4707074 - 4706825
Alignment:
| Q |
129 |
tatgaccccaacaagttaccatctttgatcttagtgtttatgatatcttggcaggatccatactcctttaaggagacgatgttcaaataatgtaactgac |
228 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||| ||| |||| ||||||||| |||||||| ||||| | | || |||||| || |
|
|
| T |
4707074 |
tatgaccccaacaagttaccatatttgatcttggtgtttatgatctctcggcacgatccatacacctttaagaggacgactattagatcctgtaacagaa |
4706975 |
T |
|
| Q |
229 |
cgaatgtattgaccccacaccaaattttttgcatcatagagtgtcccacaagtatctattgcaacattgtcgccaagtcctagtcttcttttcagatcct |
328 |
Q |
| |
|
||||| ||| ||||||||||| ||||| |||||||||| ||||||||| ||| ||||||||||||| || || ||||||| | ||||||||||||| |
|
|
| T |
4706974 |
tgaatgaatttaccccacaccatattttgagcatcatagattgtcccacatgtagctattgcaacattatcatcatatcctagtttccttttcagatcct |
4706875 |
T |
|
| Q |
329 |
ttaatctatgcttcttttctgttttagctttctttgacaatagatccttc |
378 |
Q |
| |
|
|| || |||||||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
4706874 |
ttgatttatgcttcttttctttttttgctttctttgacaatagatccttc |
4706825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 4703152 - 4703071
Alignment:
| Q |
1 |
agttatgcaaatccttaaccataaaacagtttagtcaatagatcaaacaataaaatctcaagttttagataactaaatccat |
82 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4703152 |
agttatgcaaatccttaaccataaaacagtttagtcaatagatcaaacaataaaatctcaagttttagataactaaatccat |
4703071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University