View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2485_high_19 (Length: 388)
Name: NF2485_high_19
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2485_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 74 - 369
Target Start/End: Complemental strand, 29126164 - 29125859
Alignment:
| Q |
74 |
acaaaagtcacttggttttgttgttacgcaagatgccaccgtagtctctctgattgcccgccc-------------aagagaattttcatcaacatccgc |
160 |
Q |
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| T |
29126164 |
acaaaagtcacttggttttgttgttacgcaagatgccaccgtagtctctctgattgcccgccctatatatattgtcaagagaattttcatcaacatccgc |
29126065 |
T |
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| Q |
161 |
atgaggagtggtaggagcatgcagcttggacgtaggaccctaaaagtagtcaatcattccacgagactccttgaaaaacaaaatcatttcttgcacgtca |
260 |
Q |
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| T |
29126064 |
atg-------gtaggagcatgcagcttggacgtaggaccctaaaagtagtcaatcattccacgagactccttgaaaaataaaatcatttcttgcacgtca |
29125972 |
T |
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| Q |
261 |
agttgtgacagatagatagataaaatacaacaattttaacgaagtacaaaggttgttaatgaaaa----taagttgatccacttaaaacttatcagtggg |
356 |
Q |
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| T |
29125971 |
agttgtgacagatagatagataaaatacaacaattttaacgaagtacaaaggttgttaatgaaaataattaagttgatccacttaaaacttatcggtggg |
29125872 |
T |
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| Q |
357 |
caaagcgccgtac |
369 |
Q |
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| T |
29125871 |
caaagcgccgtac |
29125859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 29126190 - 29126162
Alignment:
| Q |
25 |
gatttgaagagttgatatctcactcaaca |
53 |
Q |
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| T |
29126190 |
gatttgaagagttgatatctcactcaaca |
29126162 |
T |
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