View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2485_high_22 (Length: 375)
Name: NF2485_high_22
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2485_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 203 - 362
Target Start/End: Original strand, 6996802 - 6996966
Alignment:
| Q |
203 |
ggaaaattaaactccatcatttgatgaactcccaatgaaccatacatacatcatcttctgaaaatgatttaaaaaagattcatgtatccatcttaattat |
302 |
Q |
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| T |
6996802 |
ggaaaattaaactccatcatttgatgaactcccaatga----tacatacatcatcttctgaaaatgatttaaaaaagattcatgtatccatcttaattat |
6996897 |
T |
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| Q |
303 |
caaatcgaatctaattcttccttttgt---------tgttgtaatagattaattggatacatatatatg |
362 |
Q |
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| T |
6996898 |
caaatcgaatctaattcttccttttgttgttgttgttgttgtaatagattaattgggtacatatatatg |
6996966 |
T |
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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 6996657 - 6996709
Alignment:
| Q |
115 |
taaacattgtcttaatattttaagtgaagatgtgttgtaaacgtttattattg |
167 |
Q |
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| T |
6996657 |
taaacattatcttaatattttaagtgaatatgtgtcgtaaacgtttattattg |
6996709 |
T |
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