View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2485_high_23 (Length: 368)
Name: NF2485_high_23
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2485_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 30020085 - 30019752
Alignment:
| Q |
19 |
acttctccttagaaatgtaatattcatatactatagcattgnnnnnnntaatcaagatattgcatacgaaagaataattttgttaagtttgaaattgagg |
118 |
Q |
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| T |
30020085 |
acttctccttagaaatgtaatattcatatactatagcattgaaaaaa-taatcaagataatgcatacgaaagaataattttgttaagtttgaaattgagg |
30019987 |
T |
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| Q |
119 |
gtgtaatatatatgcaacatatatagaagaaaaccaaatgatgatttcacacacaaacatgcattttatacctgggatacttgctgttcttgacagcttt |
218 |
Q |
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| T |
30019986 |
gtgcaatatatatgcaacata----gaagaaaaccaaatgatgatttcacacacaaacatgcattttatacctgggatacttgctgttcttgacagcttt |
30019891 |
T |
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| Q |
219 |
ttgtccatatttcctccaacgataaccatcatccaaaatatcatcaacacttcttgtctgaaatgcaaaccttggcacttttgttgtcttcttcactctc |
318 |
Q |
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| T |
30019890 |
ttgtccatatttcctccaacgataaccatcatccaaaatatcatcaacacttcttgtctgaaatgcaaaccttggcacttttgtggtcttcttcactctc |
30019791 |
T |
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| Q |
319 |
ccacctttaacccttttctcctctaacttgtttcccttt |
357 |
Q |
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| T |
30019790 |
ccacctttaacccttttctcctctaacttgtttcccttt |
30019752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 9606942 - 9606879
Alignment:
| Q |
188 |
acctgggatacttgctgttcttgacagctttttgtccatatttcctccaacgataaccatcatc |
251 |
Q |
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| T |
9606942 |
acctgggaaatttgttgtttttaacagctttttggccatatttcctccatctataaccatcatc |
9606879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 251
Target Start/End: Complemental strand, 9834513 - 9834450
Alignment:
| Q |
188 |
acctgggatacttgctgttcttgacagctttttgtccatatttcctccaacgataaccatcatc |
251 |
Q |
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| T |
9834513 |
acctgggaaatttgttgtttttaacagctttttggccatatttcctccatctataaccatcatc |
9834450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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