View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2485_high_30 (Length: 291)
Name: NF2485_high_30
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2485_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 12 - 273
Target Start/End: Complemental strand, 34145504 - 34145243
Alignment:
| Q |
12 |
atgaataattgaatttgctaatttaatgtgcagttatggatagagagattattcgcccatgtgcagcttgcaagcatcttcataggaagtgccaccctac |
111 |
Q |
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| T |
34145504 |
atgaataattgaatttgctaatttaatgtgcagcaatggatagagagattattcgcccatgtgcagcttgcaagcatctccataggaagtgccaccttac |
34145405 |
T |
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| Q |
112 |
ctgtgtcttagctccttactttccaaaggacaacccggagcgtttcatcaaggtacactcggtgtttgggaagagaaatgtgactaatctgttgaaaaaa |
211 |
Q |
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| T |
34145404 |
ctgtgtcttagctccttactttccaaaggacaacccggagcgtttcatcaaggtacactcggtgtttggaatgagaaatgtgactaatctgttgaaaaaa |
34145305 |
T |
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| Q |
212 |
ctagatgtttcacatcatgaacaagctgttgaatccttggtgtatgaggctgatgcctggtt |
273 |
Q |
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| T |
34145304 |
ttggatgtttcacatcatgaacaagctgttgaatccttggtgtatgaagctgatgcctggtt |
34145243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 34155842 - 34155583
Alignment:
| Q |
17 |
taattgaatttgctaatttaatgtgcagttat---ggatagagagattattcgcccatgtgcagcttgcaagcatcttcataggaagtgccaccctacct |
113 |
Q |
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| T |
34155842 |
taattgaatttgttaatttaatgtgcagtaataatggcaagagagattattcgcccgtgcgcagcatgcaagcatctccgtcaggagtgcgactcaagct |
34155743 |
T |
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| Q |
114 |
gtgtcttagctccttactttccaaaggacaacccggagcgtttcatcaaggtacactcggtgtttgggaagagaaatgtgactaatctgttgaaaaaact |
213 |
Q |
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| T |
34155742 |
gtgaccttgctccttactttccacctgacaacccagagcgtttcatcaaggtacactctgtgtttggaaagaacaatgtgtcgaatatgttgaaaaaagt |
34155643 |
T |
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| Q |
214 |
agatgtttcacatcatgaacaagctgttgaatccttggtgtatgaggctgatgcctggtt |
273 |
Q |
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| T |
34155642 |
tgatgcttcacatcacgaacaagctattgaatcattcgtgtatgaggctgaggccaggtt |
34155583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 34140954 - 34140881
Alignment:
| Q |
17 |
taattgaatttgctaatttaatgtgcagttatggatagagagattattcgcccatgtgcagcttgcaagcatct |
90 |
Q |
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| T |
34140954 |
taattgaatttcctaatttaatgtgcagttatggcaaaagagattattcgcctgtgtgcagtgtgcaagcatct |
34140881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 34134582 - 34134509
Alignment:
| Q |
17 |
taattgaatttgcta-atttaatgtgcagttatggatagagagattattcgcccatgtgcagcttgcaagcatc |
89 |
Q |
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| T |
34134582 |
taattgaatttgttatatttaatttacagttatggcagaagagattattcgcccgtgtgcagcgtgcaagcatc |
34134509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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