View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2485_high_4 (Length: 544)

Name: NF2485_high_4
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2485_high_4
NF2485_high_4
[»] chr2 (9 HSPs)
chr2 (18-535)||(7352774-7353291)
chr2 (18-138)||(7353596-7353713)
chr2 (51-118)||(7336095-7336162)
chr2 (45-112)||(7365200-7365266)
chr2 (79-136)||(7370316-7370371)
chr2 (88-138)||(7373127-7373176)
chr2 (457-529)||(7908738-7908809)
chr2 (98-129)||(7332107-7332138)
chr2 (73-113)||(7375105-7375144)
[»] scaffold0041 (1 HSPs)
scaffold0041 (51-120)||(55201-55270)
[»] chr7 (1 HSPs)
chr7 (51-120)||(40917825-40917894)
[»] chr6 (1 HSPs)
chr6 (69-120)||(18499263-18499314)


Alignment Details
Target: chr2 (Bit Score: 494; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 18 - 535
Target Start/End: Original strand, 7352774 - 7353291
Alignment:
Q  18 ccaacaagaagaagccagtgtattatcaggtcaaagaagcattctttgttcagttgttcagattcaattcaactaactaatccattcatttacaaccatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7352774 ccaacaagaagaagccagtgtattatcaggtcaaagaagcattctttgttcagttgttcagattcaattcaactaactaatccattcatttacaaccatt 7352873  T
Q  118 tgagtaagaaacaatctctgatttctgaacacaaacaatagcatcaaaatcacatttcaaaagagaaaatccaaacaaaatcagcagcaaccatataaga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7352874 tgagtaagaaacaatctctgatttctgaacacaaacaatagcatcaaaatcacatttcaaaagagaaaatccaaacaaaatcagcagcaaccatataaga 7352973  T
Q  218 tagtcatagtattttcattcgcatcattaacagtactaacatcatctcaaggataatctttgtgaagccagcttcccaggccaactcaaaaccatgaatg 317  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7352974 taatcatagtattttcattcgcatcattaacagtactaacatcatctcaaggataatctttgtgaagccagcttcccaggccaactcaaaaccatgaatg 7353073  T
Q  318 actcttcaccattcagcagcatttcacctcccctccattaaaatccctaactttcccgtcgcttgaactaaacagatccttagaagctacattcatattc 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7353074 actcttcaccattcagcagcatttcacctcccctccattaaaatccctcactttcccgtcgcttgaactaaacagatccttagaagctacattcatattc 7353173  T
Q  418 aatttgataacccaactaaggtttggcctaaactctaagcacccatccttattatgtgacaaactctccataagtagcctttcattcttcttggaccttt 517  Q
    |||||||||||||  || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7353174 aatttgataacccggctcaggtttggcctaaactctaaacacccatccttattatgtgacaaactctccataagtagcctttcattcttcttggaccttt 7353273  T
Q  518 ccatttctaaatattctt 535  Q
    ||||||||||||||||||    
T  7353274 ccatttctaaatattctt 7353291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 7353596 - 7353713
Alignment:
Q  18 ccaacaagaagaagccagtgtattatcaggtcaaagaagcattctttgttcagttgttcagattcaattcaactaactaatccattcatttacaaccatt 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||| ||||||||| |||| |||    
T  7353596 ccaacaagaagaagccaatgtattatcaggtcaaagaagcattctttgttcagttgtt-acattcaattcaactaattaat-cattcatttgcaacaatt 7353693  T
Q  118 tgagtaagaaacaatctctga 138  Q
    |||  ||| ||||||||||||    
T  7353694 tgaccaag-aacaatctctga 7353713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 7336095 - 7336162
Alignment:
Q  51 aagaagcattctttgttcagttgttcagattcaattcaactaactaatccattcatttacaaccattt 118  Q
    |||||| |||||||||||||||||||  |||| ||||| ||||||||||||||| |||||||||||||    
T  7336095 aagaagtattctttgttcagttgttcgcattcgattcagctaactaatccattcttttacaaccattt 7336162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 7365200 - 7365266
Alignment:
Q  45 aggtcaaagaagcattctttgttcagttgttcagattcaattcaactaactaatccattcatttacaa 112  Q
    |||||||||||||||| ||| ||||||| || | ||||||||||||||||||| ||||||||||||||    
T  7365200 aggtcaaagaagcatttttt-ttcagttcttaacattcaattcaactaactaacccattcatttacaa 7365266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 7370316 - 7370371
Alignment:
Q  79 attcaattcaactaactaatccattcatttacaaccatttgagtaagaaacaatctct 136  Q
    |||||||||||||||||||||||||||  ||||||||||||| |||||||| ||||||    
T  7370316 attcaattcaactaactaatccattca--tacaaccatttgaataagaaaccatctct 7370371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 7373127 - 7373176
Alignment:
Q  88 aactaactaatccattcatttacaaccatttgagtaagaaacaatctctga 138  Q
    ||||||||||||||| ||||||||||||||||| |||| ||||||||||||    
T  7373127 aactaactaatccatgcatttacaaccatttgattaag-aacaatctctga 7373176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 529
Target Start/End: Complemental strand, 7908809 - 7908738
Alignment:
Q  457 cacccatccttatta-tgtgacaaactctccataagtagcctttcattcttcttggacctttccatttctaaat 529  Q
    ||||||||||||||| |||||||||||||  |||| ||| ||| |||| ||||| |||||||||||||||||||    
T  7908809 cacccatccttattaatgtgacaaactct--ataaatagtcttgcatttttcttagacctttccatttctaaat 7908738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 129
Target Start/End: Original strand, 7332107 - 7332138
Alignment:
Q  98 tccattcatttacaaccatttgagtaagaaac 129  Q
    ||||||||||||||||||||||||||||||||    
T  7332107 tccattcatttacaaccatttgagtaagaaac 7332138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 7375105 - 7375144
Alignment:
Q  73 gttcagattcaattcaactaactaatccattcatttacaac 113  Q
    ||||| |||||||||||||||||||| ||||||||||||||    
T  7375105 gttcacattcaattcaactaactaat-cattcatttacaac 7375144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 55201 - 55270
Alignment:
Q  51 aagaagcattctttgttcagttgttcagattcaattcaactaactaatccattcatttacaaccatttga 120  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| || | |||||||||||||||||    
T  55201 aagaagcattctttgttcagttgttcacattcaattcaactaactaacccctccatttacaaccatttga 55270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 40917894 - 40917825
Alignment:
Q  51 aagaagcattctttgttcagttgttcagattcaattcaactaactaatccattcatttacaaccatttga 120  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| || | |||||||||||||||||    
T  40917894 aagaagcattctttgttcagttgttcacattcaattcaactaactaacccctccatttacaaccatttga 40917825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 18499263 - 18499314
Alignment:
Q  69 agttgttcagattcaattcaactaactaatccattcatttacaaccatttga 120  Q
    ||||||||| ||||||||||||||||||| || | |||||||||||||||||    
T  18499263 agttgttcacattcaattcaactaactaacccctccatttacaaccatttga 18499314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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