View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2485_high_7 (Length: 523)

Name: NF2485_high_7
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2485_high_7
NF2485_high_7
[»] chr1 (4 HSPs)
chr1 (10-418)||(8141807-8142208)
chr1 (408-507)||(8142221-8142321)
chr1 (321-417)||(4931654-4931749)
chr1 (267-351)||(18375038-18375123)
[»] chr5 (3 HSPs)
chr5 (33-199)||(22210106-22210273)
chr5 (62-166)||(5351790-5351895)
chr5 (408-465)||(22209802-22209859)
[»] chr2 (3 HSPs)
chr2 (33-168)||(9130594-9130730)
chr2 (217-467)||(9130812-9131066)
chr2 (83-166)||(31037298-31037381)
[»] chr4 (5 HSPs)
chr4 (77-166)||(34730207-34730297)
chr4 (274-351)||(1492102-1492180)
chr4 (409-457)||(1530418-1530466)
chr4 (408-458)||(1492294-1492344)
chr4 (274-337)||(1514798-1514862)
[»] chr7 (1 HSPs)
chr7 (81-166)||(17907155-17907241)
[»] chr3 (6 HSPs)
chr3 (89-166)||(34786053-34786131)
chr3 (62-166)||(20166768-20166873)
chr3 (62-166)||(47652330-47652434)
chr3 (408-467)||(54256587-54256646)
chr3 (206-252)||(47953982-47954028)
chr3 (359-391)||(41514446-41514478)
[»] chr6 (1 HSPs)
chr6 (33-171)||(490848-490991)


Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 10 - 418
Target Start/End: Original strand, 8141807 - 8142208
Alignment:
Q  10 aataatatagtacctaaaacctatcttggtagaatcagaagcagagtttgaggacattgattccgatgattcaattgaagaagttgaaggatatgcctca 109  Q
    |||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8141807 aataatatagtaccaaaaatctatcttggtggaatcagaagcagagtttgaggacattgattccgatgattcaattgaagaagttgaaggatatgcctca 8141906  T
Q  110 ctatctgaaaatgaggataatattatgttggagaagaggagaataattagatcttttatcaccgattagaacttaaaactaccaattatttagatttttt 209  Q
     |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8141907 ttatctgaaaatgaggataatattatgttggagaagag---aataattagatcttttatcaccgattaaaacttaaaactaccaattatttagatttttt 8142003  T
Q  210 gagttttaagtcacttttaatttctgttaatggctttctgcaataatttatgcatatatcatgctttactagttgtttaactattgagattttttgtttt 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||| |||||||||||||||    
T  8142004 gagttttaagtcacttttaatttctgttaatggctttctgcaataatttatgcat----catgctttactagttgtttaactatggagattttttgtttt 8142099  T
Q  310 atatgaagtcattttaaatttctgtttatgtaacttctatttgtgtgttagcatgctttattttatacataattatttatttgaacagttttgcagtttc 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8142100 atatgaagtcattttaaatttctgtttatgtaacttctatttgtgtgttcgcatgctttattttatacataattatttatttgaacagttttgcagtttc 8142199  T
Q  410 cgctatttg 418  Q
    |||| ||||    
T  8142200 cgctctttg 8142208  T

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Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 408 - 507
Target Start/End: Original strand, 8142221 - 8142321
Alignment:
Q  408 tccgctatttgtcatattggatttt-tggcaatccaatattttccacgatccgatattaatcgataggaattacatatcaagaatagatgaagtacaatc 506  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8142221 tccgctatttgtcatattggattttttggcaatccaatattttccacgatccgatattaatagataggaattacatatcaagaatagatgaagtacaatc 8142320  T
Q  507 t 507  Q
    |    
T  8142321 t 8142321  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 321 - 417
Target Start/End: Complemental strand, 4931749 - 4931654
Alignment:
Q  321 ttttaaatttctgtttatgtaacttctatttgtgtgttagcatgctttattttatacataattatttatttgaacagttttgcagtttccgctattt 417  Q
    ||||||||||||| |||||||  || ||||||||||  | |||||||||||||||| |||||||||||||| ||||| | ||||| |||| ||||||    
T  4931749 ttttaaatttctggttatgtagtttttatttgtgtgcaa-catgctttattttatatataattatttatttcaacaggtgtgcagcttccactattt 4931654  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 351
Target Start/End: Original strand, 18375038 - 18375123
Alignment:
Q  267 atcatgctttactagttgttt-aactattgagattttttgttttatatgaagtcattttaaatttctgtttatgtaacttctattt 351  Q
    |||||||||||  | |||||| |||||||||||||||  ||||||| | |||||||||| |||||||||||||||| ||| |||||    
T  18375038 atcatgctttatcatttgtttgaactattgagattttgagttttatgtcaagtcatttttaatttctgtttatgtagcttttattt 18375123  T

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Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 33 - 199
Target Start/End: Complemental strand, 22210273 - 22210106
Alignment:
Q  33 tcttggtagaatcagaagcagagtttgaggacattgattccgatgattcaattgaagaagttgaaggatatgcctcactatctgaaaatgaggataat-a 131  Q
    |||| |||||||| |||| |||||||||||| |||||||  ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |    
T  22210273 tcttagtagaatcggaagtagagtttgaggatattgatttagatgattcaatagaagaagttgaaggatgtgcctcactatctgaaaatgaggataatga 22210174  T
Q  132 ttatgttggagaagaggagaataattagatcttttatcaccgattagaacttaaaactaccaattatt 199  Q
    ||||||||| |||||||||||||| || ||||||||||||   |||||||||| ||||||||||||||    
T  22210173 ttatgttggggaagaggagaataactatatcttttatcactagttagaacttagaactaccaattatt 22210106  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 62 - 166
Target Start/End: Original strand, 5351790 - 5351895
Alignment:
Q  62 gacattgattccgatgattcaattgaagaagttgaaggatatgcctcactatctgaaaatgaggataat-attatgttggagaagaggagaataattaga 160  Q
    ||||||||||| || |||||| |||||||||||||||||||||||||||||| || ||||| ||||||| |||||||||| |||||||||||||||| ||    
T  5351790 gacattgattctgaggattcagttgaagaagttgaaggatatgcctcactatgtggaaatggggataatgattatgttggggaagaggagaataattgga 5351889  T
Q  161 tctttt 166  Q
    ||||||    
T  5351890 tctttt 5351895  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 408 - 465
Target Start/End: Complemental strand, 22209859 - 22209802
Alignment:
Q  408 tccgctatttgtcatattggatttttggcaatccaatattttccacgatccgatatta 465  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||  |||| |||||||    
T  22209859 tccgctatttgtcatatcggatttttggcgatccaatattttccgtgatcagatatta 22209802  T

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Target: chr2 (Bit Score: 93; Significance: 5e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 33 - 168
Target Start/End: Original strand, 9130594 - 9130730
Alignment:
Q  33 tcttggtagaatcagaagcagagtttgaggacattgattccgatgattcaattgaagaagttgaaggatatgcctcactatctgaaaatgaggataa-ta 131  Q
    |||||||||||||||||||||||||| |||| |||||||| ||  ||||||||||||||||||| ||| ||||||||||||||||||||||||| || ||    
T  9130594 tcttggtagaatcagaagcagagtttaaggaaattgattcagacaattcaattgaagaagttgacggaaatgcctcactatctgaaaatgaggacaatta 9130693  T
Q  132 ttatgttggagaagaggagaataattagatcttttat 168  Q
    ||||||||| |||||||||||||||||||||||||||    
T  9130694 ttatgttggggaagaggagaataattagatcttttat 9130730  T

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Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 217 - 467
Target Start/End: Original strand, 9130812 - 9131066
Alignment:
Q  217 aagtcacttttaatttctgttaatggctttctgcaataatttatgcatatat----catgctttactagttgttt-aactattgagattttttgttttat 311  Q
    ||||||||||||||||||| | |||||||||||||||||| | ||||  |||    || | | |||||||||||| |||||||||||||||  ||| |||    
T  9130812 aagtcacttttaatttctgcttatggctttctgcaataatgtgtgcaactatgcaccaggttctactagttgtttgaactattgagattttaagttgtat 9130911  T
Q  312 atgaagtcattttaaatttctgtttatgtaacttctatttgtgtgttagcatgctttattttatacataattatttatttgaacagttttgcagtttccg 411  Q
    || || ||||||| |||||||||||   || ||| ||||||| ||| |||||||||||||||||| |||||||||||||||||| ||||||  | || ||    
T  9130912 atcaattcatttttaatttctgtttggttagcttttatttgtttgt-agcatgctttattttatatataattatttatttgaaccgttttgtggcttacg 9131010  T
Q  412 ctatttgtcatattggatttttggcaatccaatattttccacgatccgatattaat 467  Q
    |||| | |||||| | ||||||||| |||  ||||||||| |||| ||||||||||    
T  9131011 ctatgtatcatatcgaatttttggcgatctgatattttccgcgatacgatattaat 9131066  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 31037381 - 31037298
Alignment:
Q  83 attgaagaagttgaaggatatgcctcactatctgaaaatgaggataat-attatgttggagaagaggagaataattagatctttt 166  Q
    |||||| ||||||||||||||||||||| |||| |  ||| ||||||| |||||| ||| ||||| |||||||| ||||||||||    
T  31037381 attgaaaaagttgaaggatatgcctcacgatct-agtatgtggataatgattatgctggggaagaagagaataaatagatctttt 31037298  T

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Target: chr4 (Bit Score: 59; Significance: 9e-25; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 77 - 166
Target Start/End: Complemental strand, 34730297 - 34730207
Alignment:
Q  77 gattcaattgaagaagttgaaggatatgcctcactatctgaaaatgaggataat-attatgttggagaagaggagaataattagatctttt 166  Q
    ||||| ||| || ||||||||||||||||||||||||||||||||||||||||| || ||||| | |||||||||||||||||||||||||    
T  34730297 gattccatttaaaaagttgaaggatatgcctcactatctgaaaatgaggataatgatgatgttagggaagaggagaataattagatctttt 34730207  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 274 - 351
Target Start/End: Original strand, 1492102 - 1492180
Alignment:
Q  274 tttactagttgttt-aactattgagattttttgttttatatgaagtcattttaaatttctgtttatgtaacttctattt 351  Q
    |||||||||||||| ||||||||| |||||  ||||||||| |||||||||| |||||||||||| ||| ||| |||||    
T  1492102 tttactagttgtttgaactattgaaattttgagttttatatcaagtcatttttaatttctgtttaggtagcttttattt 1492180  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 457
Target Start/End: Original strand, 1530418 - 1530466
Alignment:
Q  409 ccgctatttgtcatattggatttttggcaatccaatattttccacgatc 457  Q
    ||||||||||| |||||||||||||||| |||| ||| |||||||||||    
T  1530418 ccgctatttgttatattggatttttggcgatccgatactttccacgatc 1530466  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 458
Target Start/End: Original strand, 1492294 - 1492344
Alignment:
Q  408 tccgctatttgtcatattggatttttggcaatccaatattttccacgatcc 458  Q
    |||||||||||| |||| ||||||||||| |||| ||||||||| ||||||    
T  1492294 tccgctatttgttatatcggatttttggcgatcctatattttccgcgatcc 1492344  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 1514798 - 1514862
Alignment:
Q  274 tttactagttgttt-aactattgagattttttgttttatatgaagtcattttaaatttctgttta 337  Q
    |||||||||||||| ||||||||| |||||  |||| |  | |||||||||||||||||||||||    
T  1514798 tttactagttgtttgaactattgaaattttgagtttaacgtcaagtcattttaaatttctgttta 1514862  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 17907241 - 17907155
Alignment:
Q  81 caattgaagaagttgaaggatatgcctcactatctgaaaatgaggataa-tattatgttggagaagaggagaataattagatctttt 166  Q
    ||||| ||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| | |||||||||| ||||||||||||||    
T  17907241 caatttaagaagttgaacgatatgcctcactatctgaaaatgaagataattattatgtttgggaagaggagagtaattagatctttt 17907155  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 34786131 - 34786053
Alignment:
Q  89 gaagttgaaggatatgcctcactatctgaaaatgaggataat-attatgttggagaagaggagaataattagatctttt 166  Q
    |||||||||||| |||||| |||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  34786131 gaagttgaaggagatgcctaactaactgaaaatgaggataatgattatgttggggaagaggagaataattagatctttt 34786053  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 62 - 166
Target Start/End: Original strand, 20166768 - 20166873
Alignment:
Q  62 gacattgattccgatgattcaattgaagaagttgaaggatatgcctcactatctgaaaatgaggataat-attatgttggagaagaggagaataattaga 160  Q
    ||||||||||| || ||||| ||| ||||||||||||||||||||||||||||  |||||||||||||| |||||||| |  || |||| ||||||||||    
T  20166768 gacattgattctgaggattctatttaagaagttgaaggatatgcctcactatcgcaaaatgaggataatgattatgttaggaaataggaaaataattaga 20166867  T
Q  161 tctttt 166  Q
    ||||||    
T  20166868 tctttt 20166873  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 62 - 166
Target Start/End: Complemental strand, 47652434 - 47652330
Alignment:
Q  62 gacattgattccgatgattcaattgaagaagttgaaggatatgcctcactatctgaaaatgaggataa-tattatgttggagaagaggagaataattaga 160  Q
    |||||||||| | | |||||| || ||||||||||||||||||||||||||||| ||||||| |||||  |||||||||  ||||||||||||| |||||    
T  47652434 gacattgattacaaggattcattt-aagaagttgaaggatatgcctcactatctaaaaatgaagataacgattatgttgtggaagaggagaatagttaga 47652336  T
Q  161 tctttt 166  Q
    ||||||    
T  47652335 tctttt 47652330  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 467
Target Start/End: Complemental strand, 54256646 - 54256587
Alignment:
Q  408 tccgctatttgtcatattggatttttggcaatccaatattttccacgatccgatattaat 467  Q
    |||||||||| |||||   |||||||||| |||| ||||||||||||||||| |||||||    
T  54256646 tccgctatttctcatagcagatttttggcgatccgatattttccacgatccgctattaat 54256587  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 47954028 - 47953982
Alignment:
Q  206 ttttgagttttaagtcacttttaatttctgttaatggctttctgcaa 252  Q
    ||||||||||||||||| ||||||||| ||||  |||||||||||||    
T  47954028 ttttgagttttaagtcatttttaatttatgtttctggctttctgcaa 47953982  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 391
Target Start/End: Complemental strand, 41514478 - 41514446
Alignment:
Q  359 agcatgctttattttatacataattatttattt 391  Q
    |||||||||||||||||| ||||||||||||||    
T  41514478 agcatgctttattttatatataattatttattt 41514446  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 171
Target Start/End: Complemental strand, 490991 - 490848
Alignment:
Q  33 tcttggtagaatcagaagcagagtttgaggacattgattccgatgattcaattgaagaagttgaaggatatgcctcactatctgaa---aatgaggataa 129  Q
    |||||||| ||||| |||||||||| ||||| |||||||| | ||||||||||||| |||||||  ||||||| |||  | |||||   || ||||||||    
T  490991 tcttggtataatcaaaagcagagttagaggatattgattcaggtgattcaattgaaaaagttgacagatatgcttcaaaacctgaaaacaacgaggataa 490892  T
Q  130 t-attatgtt-ggagaagaggagaataattagatcttttatcac 171  Q
    | |||||||| || ||||||||| ||||||||||||||||||||    
T  490891 tgattatgttgggggaagaggagcataattagatcttttatcac 490848  T

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