View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2485_low_11 (Length: 448)
Name: NF2485_low_11
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2485_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 138 - 290
Target Start/End: Complemental strand, 48569090 - 48568936
Alignment:
| Q |
138 |
ccacaatgaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtttcccgctcggagccccataggtatctc |
237 |
Q |
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| T |
48569090 |
ccacaatgaatgttcaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtttcccgctcggagccccataggtatctc |
48568991 |
T |
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| Q |
238 |
catagagaagaaggtagagtcttctgtc--gagctctttgcagtgacctaaagaa |
290 |
Q |
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| T |
48568990 |
catagagaagaaggtagagtcttctgtcaagagctctttgcagtgacctaaagaa |
48568936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 293 - 431
Target Start/End: Complemental strand, 48568909 - 48568771
Alignment:
| Q |
293 |
cgcagcaattatgtcaagacaagttcagttctttaaaaaactaacagggattaaggaaatggcctaattaatttgtctagcaaaattgactgaaataata |
392 |
Q |
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| T |
48568909 |
cgcagcaattatgtcaagacaagttcagttctttaaaaaactaacagggattaaggaaatggcctaattaatttgtctagcaaaattgactgaaataata |
48568810 |
T |
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| Q |
393 |
ttagcgttgactattatctaggagacaagatgaggaatg |
431 |
Q |
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| T |
48568809 |
ttagcgttgactattatctaggagacaagatgaggaatg |
48568771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 48569201 - 48569141
Alignment:
| Q |
19 |
aggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc |
79 |
Q |
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| T |
48569201 |
aggtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaagatttc |
48569141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 145 - 288
Target Start/End: Original strand, 10822202 - 10822347
Alignment:
| Q |
145 |
gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtttcccgctcggagccccataggtatctccatagag |
244 |
Q |
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| T |
10822202 |
gaatgttcaccttacgcatagtttcctctgattcatatactttttctggaaaatgccacacaggctttccacttggagccccataagcatcaccaaagag |
10822301 |
T |
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| Q |
245 |
aagaaggtagagtcttctgtc--gagctctttgcagtgacctaaag |
288 |
Q |
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| T |
10822302 |
aagaaggtaaagtcttctgtcaagagccctttgtagtgacctaaag |
10822347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 145 - 289
Target Start/End: Complemental strand, 36145194 - 36145048
Alignment:
| Q |
145 |
gaatgtttaccttacgcatggtttcctctgattcataaggtttctctggaaaatgccacacaggtttcccgctcggagccccataggtatctccatagag |
244 |
Q |
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| T |
36145194 |
gaatgttcaccttacgcatggtatcctctgattcatatactttttctggaaaatgccacacaggctttccacttggagccccataagcatcaccaaagag |
36145095 |
T |
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| Q |
245 |
aagaaggtagagtcttctgtc--gagctctttgcagtgacctaaaga |
289 |
Q |
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||||||||| |||||||| || |||| ||||| ||||||||||||| |
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| T |
36145094 |
aagaaggtaaagtcttctatcaagagccctttgtagtgacctaaaga |
36145048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 10821885 - 10821937
Alignment:
| Q |
21 |
gtattggagagatctcctatgactgatttcaatgcagactcagcacactgcaa |
73 |
Q |
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| T |
10821885 |
gtattcgaaagatctcctaagactgatttcaaggcagattctgcacactgcaa |
10821937 |
T |
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