View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2485_low_12 (Length: 446)
Name: NF2485_low_12
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2485_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 17 - 435
Target Start/End: Original strand, 27733187 - 27733607
Alignment:
| Q |
17 |
actacccaaatcattatccacagtggtcacttcagttgggtggaaatacgcctctgccacgttgttgacttcttcagagtgatctttgagttcacctagg |
116 |
Q |
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| T |
27733187 |
actacccaaatcattatccacagtggtcacttcagttgggtggaaatacgcctctgccacgttgttgacttcttcagagtgatatttgagttcacctagg |
27733286 |
T |
|
| Q |
117 |
ccatcctccacgaaagaaatatccgaggattctacaggggcggaagtgcattcatctaaactcggagttgagtcagcatacatactaccagaactgtccc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27733287 |
ccatcctccacgaaagaaatatccgaggattctacaggggcggaagtgcattcatctaaactcggagttgagtcagcatacatactaccagaactgtccc |
27733386 |
T |
|
| Q |
217 |
cctgaagaaattcagttaataccgtggtaccatcatccgagccgtcaaccttctcattctgacctttaaattgtattaaagttggtcatcagtcatgatt |
316 |
Q |
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||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27733387 |
cctgaagaaattcagttgataccgtggtaccatcatctgagccgtcaaccttctcattctgacctttaaattgtattaaagttggtcatcagtcatgatt |
27733486 |
T |
|
| Q |
317 |
gtgagtaatgcagaataata--gcaataagaaagaagaaattgtttgacctgttaacagaacctcaatatcatttgcagcatccgatctttcatctaaac |
414 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27733487 |
gtgagtaatgcagaataatagtgcaataagaaagaagaaattgtttgacctgttaatagaacctcaatatcatttgcagcatccgatctttcatctaaac |
27733586 |
T |
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| Q |
415 |
cttttcccgtttctaaagaat |
435 |
Q |
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||||||||||||||||||||| |
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| T |
27733587 |
cttttcccgtttctaaagaat |
27733607 |
T |
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