View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2485_low_15 (Length: 423)
Name: NF2485_low_15
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2485_low_15 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 10 - 423
Target Start/End: Complemental strand, 26393017 - 26392605
Alignment:
| Q |
10 |
aagaaaatatagcacaatatgtttgttcctgtcaaatctttaatctggtatatacttcctgcccacaagaacttgttgattgggatcataagagcaaagt |
109 |
Q |
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| T |
26393017 |
aagaaaatatagcacaatatgtttgttcctgtcaaatctttaatctggtatatacttcctgcccacaggaacttgttgattgggatcataagagcaaagt |
26392918 |
T |
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| Q |
110 |
agacgggaaaatgcatgcttgtgcacacgatgcccatgttgtgatgcttctcggtgctgcaaagatactgcaagaaatgaaagatatattaaaggtaaag |
209 |
Q |
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| T |
26392917 |
agacgggaaaatacatgcttgtgcacacgatgcccatgttgtgatgcttctcggtgctgcaaagatactgcaagaaatgaaagatatattaaaggtaaag |
26392818 |
T |
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| Q |
210 |
tggaattggaaattttttaaatgagctttatggaaaatcttccattgaaaactaaatcattcacatgcaagctactgttgttcttatattccaacctgcc |
309 |
Q |
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| T |
26392817 |
tggaattggaaattttttaaatgagctttatggaaaatcttccattgaaaactaaatcattcacatgcaagctactgttgttcttatattccaacctgcc |
26392718 |
T |
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| Q |
310 |
gaggcaaaaaggcaccggagccaagctgttggttgcagggaatgtgctcaacaaagtggaggcaatctttggcattcatttaatgccacagaaatttctc |
409 |
Q |
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|||| |||||||||||||||| |||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26392717 |
gagg-aaaaaggcaccggagcgaagctgatggttgaagagaatgtgctcaacaaagtggaggcaatctttggcattcatttaatgccacataaatttctc |
26392619 |
T |
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| Q |
410 |
ccccaaggtgtagt |
423 |
Q |
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| T |
26392618 |
ccccaaggtgtagt |
26392605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 14 - 323
Target Start/End: Original strand, 26264263 - 26264571
Alignment:
| Q |
14 |
aaatatagcacaatatgtttgttcctgtcaaatctttaatctggtatatacttcctgcccacaagaacttgttgattgggatcataagagcaaagtagac |
113 |
Q |
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|||||||| ||| || ||||||||| |||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26264263 |
aaatataggacagtaagtttgttcccgtcaaatccttaatctggtctatacttcctgcccacaggaacttgttgattgggatcataagagcaaagtagat |
26264362 |
T |
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| Q |
114 |
gggaaaatgcatgcttgtgcacacgatgcccatgttgtgatgcttctcggtgctgcaaagatactgcaagaaatgaaagatatattaaaggtaaagtgga |
213 |
Q |
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| T |
26264363 |
gggaaaatgcatgcttgtgcacacgatgcccatgttgcgatgcttctcggtgctgcaaagatactgcaagaaatgaaaaataaattaaaggtaaagtgga |
26264462 |
T |
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| Q |
214 |
attggaaattttttaaatgagctttatggaaaatcttccattgaaaactaaatcattcacatgcaagctactgttgttcttatattccaacctgccgagg |
313 |
Q |
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| T |
26264463 |
attgcaaaaaatttaaatgagctttatgggcaatcttccattgaaaactaaatacttcgcatgcaggctactgttgttcttatattccaaccagcggagg |
26264562 |
T |
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| Q |
314 |
caaaaaggca |
323 |
Q |
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||||||||| |
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| T |
26264563 |
-aaaaaggca |
26264571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 84 - 221
Target Start/End: Complemental strand, 31838782 - 31838645
Alignment:
| Q |
84 |
gttgattgggatcataagagcaaagtagacgggaaaatgcatgcttgtgcacacgatgcccatgttgtgatgcttctcggtgctgcaaagatactgcaag |
183 |
Q |
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||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||| | ||||||||| |||||||||||||||||||||| |
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| T |
31838782 |
gttgattgggatcataaaagcaaagtagacggaaaaatgcatgcttgtgcgcacgatgcacatgtggcgatgcttcttggtgctgcaaagatactgcaag |
31838683 |
T |
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| Q |
184 |
aaatgaaagatatattaaaggtaaagtggaattggaaa |
221 |
Q |
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|||||||||| | |||||||||||||||||||||||| |
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| T |
31838682 |
aaatgaaagacaagttaaaggtaaagtggaattggaaa |
31838645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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