View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2485_low_17 (Length: 404)
Name: NF2485_low_17
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2485_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 12 - 388
Target Start/End: Complemental strand, 34466596 - 34466220
Alignment:
| Q |
12 |
aagaacttggtctcagttgatcccaaaccatggccctatctgagctagccttaactttatcccaatgcaaagccttcaactttggcttcaaattttcttc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34466596 |
aagaacttggtctcagttgatcccaaaccatggccctatctgagctagccttaactttatcccaatgcaaagccttcaactttggctttaaattttcttc |
34466497 |
T |
|
| Q |
112 |
attctcaacactaacatcaccattaccatcttgagaaaccaccaccggagtctcccataacctcggcggcagtggcggcggaacaggaggagccatttta |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
34466496 |
attctcaacactaacatcaccattaccatcttgagaaaccaccaccggagtctcccataacctcggcggcagcggcgggggaacaggaggagccatttta |
34466397 |
T |
|
| Q |
212 |
ctcacctgagtatcattaccatcccatttcaaaccaaaatcttccatcggcataggagaacaagattcagaagaaaaagatggtgaaacagggtttatag |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34466396 |
ctcacctgagtatcattaccatcccatttcaaaccaaaatcttccatcggcataggagaacaagattcagaagaaaaagatggtgaaacagggtttatag |
34466297 |
T |
|
| Q |
312 |
gaggaaaagattgcacactttcaatagggctaagattaagtgaaggagaacgtgagagagagtaggaaagagggtat |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34466296 |
gaggaaaagattgcacactttcaatagggctaagattaagtgaaggagaacgtgagagagagtaggaaagagggtat |
34466220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 10326121 - 10326188
Alignment:
| Q |
29 |
tgatcccaaaccatggccctatctgagctagccttaactttatcccaatgcaaagccttcaactttgg |
96 |
Q |
| |
|
|||||||||||||| | | ||| || |||||| | ||||||||||||||||||| |||||||||||| |
|
|
| T |
10326121 |
tgatcccaaaccatttcacgatcggaactagccctcactttatcccaatgcaaaggcttcaactttgg |
10326188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University