View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2485_low_19 (Length: 394)
Name: NF2485_low_19
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2485_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 377
Target Start/End: Original strand, 2623359 - 2623717
Alignment:
| Q |
16 |
atatgtcttataaatggagctcgtatggtaagaggctgccatttgatatgtagggtgcaagtttgaatctgcaatacttctcttctccattcgaagtgta |
115 |
Q |
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| T |
2623359 |
atatgtcttataaatggagctcatatgataagaggctgccatttgatatgtagagtgcaagtttgaatctgcaatacttctcttctccattcgaagtgta |
2623458 |
T |
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| Q |
116 |
tgagttttgccgttaannnnnnnnaatgaaataacattgaatatggttcctaattgatataattaattatgatattagtacatagtatcatgttatttga |
215 |
Q |
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||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2623459 |
tgagttttgccattaattttttttaatgaaataacattgaatatggttcctaattgatataattaattatgatattagtacatagtatcatgttatttga |
2623558 |
T |
|
| Q |
216 |
aaagtattccatcgatctttcattaatttggacaatatatagtaacaatcatagcacaaattgtttaaacgtccatctaatatgctacatgtctctagan |
315 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2623559 |
aaagtattccatcgatgtttcattaatttggacaatatatagtaacaatcatagcacaaattgtttaaacgtccatctaatatgctacatgtctctaga- |
2623657 |
T |
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| Q |
316 |
nnnnnnnnnnnnnnnnngtcaaaattaatcgtttgcttttaatttggttcggccacaccaat |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2623658 |
--tgttttttttttgttgtcaaaattaatcgtttgcttttaatttggttcggccacaccaat |
2623717 |
T |
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