View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2485_low_21 (Length: 386)
Name: NF2485_low_21
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2485_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 380
Target Start/End: Original strand, 38583327 - 38583688
Alignment:
| Q |
19 |
ggtacgctgaaaacaaaatagaattcagtttttgcaatgaaattaagaaatctgaagagcgaattatgtggtgataatgtgatatcaagctaagcattct |
118 |
Q |
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| T |
38583327 |
ggtacgctgaaaacaaaatagaattcagtttttgcaatgaaattaagaaatctgaagagcgaattatgtggtgataatgtgatatcaagctaagcattct |
38583426 |
T |
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| Q |
119 |
aatccactcacctcttctggcattttctccagagttctcatcaactgaactagagttcttatcattttgcaagcagaactcctaaattatatcacataca |
218 |
Q |
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| T |
38583427 |
aatccactcacctcttctggcattttctccagagttctcatcaactgaactagagttcttatcattttgcaagcagaactcctaaattatatcacataca |
38583526 |
T |
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| Q |
219 |
tataacattagtctaattatcatgatacgataatactaattcagggccaaattatattttaagttataaaaacaccctcatctgctggggaatgatatca |
318 |
Q |
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| T |
38583527 |
tataacattagtctaattatcatgataagatgatactaattcaggtccaaattatattttaatttgtaaaaacaacctcatctgctggggagtgatatca |
38583626 |
T |
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| Q |
319 |
gtagttgatttccactttcaggctccccccagctttttgcttccattgcggttgatgttcat |
380 |
Q |
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|||||||| || ||||| ||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
38583627 |
gtagttgagttacacttgaaggctcccccctgctttttgcttccagtgcggttgatgttcat |
38583688 |
T |
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