View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2485_low_22 (Length: 382)
Name: NF2485_low_22
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2485_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 16 - 372
Target Start/End: Complemental strand, 11540317 - 11539961
Alignment:
| Q |
16 |
ggttggactaacaatctgcagatcacaaaatacaaccaaagtcatggatgaaaactgatctgatttctgagcagaaatataatttacctgataagctaac |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
11540317 |
ggttggactaacaatctgcagatcacaaaatacaaccaaagtcatggatgaaaactgatttgatttctgagcagaaatataatttacctgataagctaac |
11540218 |
T |
|
| Q |
116 |
ttagtccgaattaagtcaagtggataagtaaaaagcacagccgtccctccagagagtgaccctgccattaggtcaagggtaggacctttccaaacattag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11540217 |
ttagtccgaattaagtcaagtggataagtaaaaagcacagccgtccctccagagagtgaccctgccattaggtcaagggtaggacctttccaaacattag |
11540118 |
T |
|
| Q |
216 |
gaaaggcttgcatgatcaatcttcggtattcctcataggacataaaatgaagacctgcataaggaataatccttgccacacttgctccatttcccctgca |
315 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11540117 |
gaaaggcttgcatggtcaatcttcggtattcctcataggacataaaatgaagacctgcataaggaataatccttgccacacttgctccatttcccctgca |
11540018 |
T |
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| Q |
316 |
aataatttcacattggtgaatctgattaattgatagaagataaatcacctacctatg |
372 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11540017 |
aataatttcgcattggtgaatctgattaattgatagaagataaatcacctacctatg |
11539961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 16 - 372
Target Start/End: Complemental strand, 34599410 - 34599054
Alignment:
| Q |
16 |
ggttggactaacaatctgcagatcacaaaatacaaccaaagtcatggatgaaaactgatctgatttctgagcagaaatataatttacctgataagctaac |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34599410 |
ggttggactaacaatctgcagatcacaaaatacaaccaaagtcatggatgaaaactgatttgatttctgagcagaaatataatttacctgataagctaac |
34599311 |
T |
|
| Q |
116 |
ttagtccgaattaagtcaagtggataagtaaaaagcacagccgtccctccagagagtgaccctgccattaggtcaagggtaggacctttccaaacattag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34599310 |
ttagtccgaattaagtcaagtggataagtaaaaagcacagccgtccctccagagagtgaccctgccattaggtcaagggtaggacctttccaaacattag |
34599211 |
T |
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| Q |
216 |
gaaaggcttgcatgatcaatcttcggtattcctcataggacataaaatgaagacctgcataaggaataatccttgccacacttgctccatttcccctgca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34599210 |
gaaaggcttgcatgatcaatcttcggtattcctcataggacataaaatgaagacctgcataaggaataatccttgccacacttgctccatttcccctgca |
34599111 |
T |
|
| Q |
316 |
aataatttcacattggtgaatctgattaattgatagaagataaatcacctacctatg |
372 |
Q |
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||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
34599110 |
aataacttcacattggtgattctgattaattgattaaagataaatcacctacctatg |
34599054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 37 - 372
Target Start/End: Complemental strand, 34755988 - 34755653
Alignment:
| Q |
37 |
atcacaaaatacaaccaaagtcatggatgaaaactgatctgatttctgagcagaaatataatttacctgataagctaacttagtccgaattaagtcaagt |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
34755988 |
atcacaaaatacaaccaaagtcatggatgaaaactgatttgatttctgagcagagatatagtttacctgataagctaacttattccgaattaagtcaagc |
34755889 |
T |
|
| Q |
137 |
ggataagtaaaaagcacagccgtccctccagagagtgaccctgccattaggtcaagggtaggacctttccaaacattaggaaaggcttgcatgatcaatc |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
34755888 |
ggataagtaaaaagcacagccgtccctccagagagtgacccttccataaggtcaagggtaggacctttccaaacattaggaaaggcttgcacgaacaatc |
34755789 |
T |
|
| Q |
237 |
ttcggtattcctcataggacataaaatgaagacctgcataaggaataatccttgccacacttgctccatttcccctgcaaataatttcacattggtgaat |
336 |
Q |
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||||||||||||||||||||||| | |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34755788 |
ttcggtattcctcataggacatatattgaagatctacataaggaataatccttgccacacttgctccatttcccctgcaaataatttcgcattggtgaat |
34755689 |
T |
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| Q |
337 |
ctgattaattgatagaagataaatcacctacctatg |
372 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
34755688 |
ctgattaattgatagaagataaatcacctacctatg |
34755653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 34625885 - 34625814
Alignment:
| Q |
37 |
atcacaaaatacaaccaaagtcatggatgaaaactgatctgatttctgagcagaaatataatttacctgata |
108 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
34625885 |
atcacaaaatacatccaaagtcatggatgaaaactgatttgatttctgagcagaaatataatttacccgata |
34625814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 14291631 - 14291697
Alignment:
| Q |
242 |
tattcctcataggacataaaatgaagacctgcataaggaataatccttgccacacttgctccatttc |
308 |
Q |
| |
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|||| |||||| |||||| |||||||| ||||||||||||||||| ||| || |||||||| ||||| |
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| T |
14291631 |
tatttctcatatgacatataatgaagagctgcataaggaataatctttggcatacttgctctatttc |
14291697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 308
Target Start/End: Original strand, 15011197 - 15011263
Alignment:
| Q |
242 |
tattcctcataggacataaaatgaagacctgcataaggaataatccttgccacacttgctccatttc |
308 |
Q |
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|||| |||||| |||||| |||||||| || |||| ||||||||| ||| ||||||||||| ||||| |
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| T |
15011197 |
tattgctcatatgacatataatgaagagctacatacggaataatctttggcacacttgctctatttc |
15011263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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