View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2485_low_27 (Length: 355)
Name: NF2485_low_27
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2485_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-157; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 13 - 337
Target Start/End: Original strand, 679240 - 679565
Alignment:
| Q |
13 |
atactcaaatatacgcagcattcttctaattctaagaactagaaagnnnnnnnnnn-tgaaaatgaggcatataactatatttcaaactcactataagtt |
111 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
679240 |
atactcaaatatacgcagcattcttctaattctcagaactagaaagaaaaaaaaaaatgaaaatgaggcatataactacatttcaaactcactataagtt |
679339 |
T |
|
| Q |
112 |
ttagaaagctaaatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaatctgatcttcacaaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
679340 |
ttagaaagctaaatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaatctgatcttcacaaaa |
679439 |
T |
|
| Q |
212 |
catatagtgcgctgattttagaactgcagggtttggagaattgaaataatgtgggatgccctctattcttgtccaataatcatcccccaaagtattaaca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
679440 |
catatagtgcgctgattttagaactgcagggtttggagaattgaaataatgtgggatgccctctattcttgtccaataatcatcccccaaagtattaaca |
679539 |
T |
|
| Q |
312 |
caaacctctttttctgaagaaacaac |
337 |
Q |
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|||||||||||||||||||||||||| |
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| T |
679540 |
caaacctctttttctgaagaaacaac |
679565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 751047 - 751290
Alignment:
| Q |
13 |
atactcaaatatacgcagcattcttctaattctaagaactagaaagnnnnnnnnnntgaaaatgaggcatataactatatttcaaactcactataagttt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
751047 |
atactcaaatatacgcagcattcttctaattctaagaactagaaa--aaaaataaatgaaaatgaggcatagaactatatttcaaactcactataagttt |
751144 |
T |
|
| Q |
113 |
tagaaagctaaatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaatctgatcttcacaaaac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
751145 |
tagaaagctaaatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaatctgatcttcacaaaac |
751244 |
T |
|
| Q |
213 |
atatagtgcgctgattttagaactgcagggtttggagaattgaaat |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
751245 |
atatagtgcgctgattttagaactgcagggtttggagaattgaaat |
751290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 256 - 337
Target Start/End: Original strand, 747402 - 747483
Alignment:
| Q |
256 |
aataatgtgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaac |
337 |
Q |
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| T |
747402 |
aataatgtgggatgccctctattcttttccaataatcagcccccaaagtattaaaaaaaacctctttttctgaagaaacaac |
747483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 96 - 256
Target Start/End: Complemental strand, 2632659 - 2632504
Alignment:
| Q |
96 |
aaactcactataagttttagaaagctaaatgttgtgaattctttatacacatgtgaagtatatgatactatgataatcaaaagagcaagtgttgaaagaa |
195 |
Q |
| |
|
||||||||||||||||| | |||||||||| | ||||| || | ||||||||||||| ||||| |||||||||| ||||| | |||| |||||||| |
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| T |
2632659 |
aaactcactataagtttcaaaaagctaaatat---gaattattcacacacatgtgaagtgtatga--ctatgataatacaaagaacgagtggtgaaagaa |
2632565 |
T |
|
| Q |
196 |
t----ctgatcttcacaaaacatatagtgcgctgattttagaactgcagggtttggagaattgaa |
256 |
Q |
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||||||||||||||||| || |||||||||| |||||||||||||||||||||||| |
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|
| T |
2632564 |
aagacctgatcttcacaaaacaa----tgtgctgattttaaaactgcagggtttggagaattgaa |
2632504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 263 - 337
Target Start/End: Original strand, 7324687 - 7324761
Alignment:
| Q |
263 |
tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaacaac |
337 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| | |||| ||||||||||| |
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| T |
7324687 |
tgggatgtcctctattcttgtccaataatcagtccccaaagtattaacactaactttatttttggaagaaacaac |
7324761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 263 - 335
Target Start/End: Original strand, 9566094 - 9566166
Alignment:
| Q |
263 |
tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaaca |
335 |
Q |
| |
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||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||| || |||| || ||||||| |
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| T |
9566094 |
tgggatgtcctctattcttgtccaataatcagtccccaaagtataaacactaacttcattttttgtagaaaca |
9566166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 260 - 316
Target Start/End: Original strand, 9594898 - 9594954
Alignment:
| Q |
260 |
atgtgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaac |
316 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| ||||||||||| |||| |||| |
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| T |
9594898 |
atgtgggatgtcctctattcttgtccaataatcagtccccaaagtataaacaaaaac |
9594954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 335
Target Start/End: Original strand, 754888 - 754952
Alignment:
| Q |
271 |
cctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaaca |
335 |
Q |
| |
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||||||||||||||||||||||| |||||| |||| ||||||||| || |||| || ||||||| |
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| T |
754888 |
cctctattcttgtccaataatcagtccccaatgtataaacacaaacttcattttttgtagaaaca |
754952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 335
Target Start/End: Complemental strand, 2491871 - 2491799
Alignment:
| Q |
263 |
tgggatgccctctattcttgtccaataatcatcccccaaagtattaacacaaacctctttttctgaagaaaca |
335 |
Q |
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||||||| ||| |||||||||||||||||| ||||||||||| ||||| ||| || ||||| ||||||||| |
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| T |
2491871 |
tgggatgtccttgattcttgtccaataatcagtccccaaagtataaacactaacttcattttcggaagaaaca |
2491799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 2476426 - 2476377
Alignment:
| Q |
263 |
tgggatgccctctattcttgtccaataatcatcccccaaagtattaacac |
312 |
Q |
| |
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||||||| ||| |||||||||||||||||| ||||||||||||||||| |
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|
| T |
2476426 |
tgggatgtcctgcattcttgtccaataatcagtccccaaagtattaacac |
2476377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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