View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2485_low_3 (Length: 563)
Name: NF2485_low_3
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2485_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 18 - 556
Target Start/End: Complemental strand, 14528133 - 14527597
Alignment:
| Q |
18 |
cctccatgccctagtttgctattgtcattaaaagatccagtagctttttccaatgtagagtacttgaagttcaagcttttttgctctagactctttgcta |
117 |
Q |
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| T |
14528133 |
cctccatgccctatttttctattgtcattaaaagatccagtagctttttccaatgtattgtacttgaagttcaagcttttttgctctagactctttgcta |
14528034 |
T |
|
| Q |
118 |
acttttctgcatcatttgatccaggcaaccaggacgaccatttggatcagtaaagtttctcaatgtagttgtgttataactgctaacgattccacaattt |
217 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14528033 |
acttttctgcatcatttgatcctggcaaccaggacgaccatttggatcagtaaagtttctcaatgtagttgtgttataactgctaacgattccacaattt |
14527934 |
T |
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| Q |
218 |
gtttgcaagataagttgtatcactttgaaaagaaaaaacagaatttcttactatgatgatataaatggtgtgatattctaggtttgctattattattaac |
317 |
Q |
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| T |
14527933 |
gtttgcaagataaattgtagcactttgaaaagaaaaaacagaatttcttactatgatgatataaatggtgtgatattctaggtttgctattattattaac |
14527834 |
T |
|
| Q |
318 |
aaatatagagataagctattaaatcttatacctcttcttttcttttgaatgtatctctgtttccagatataagctccaaaagttacggcaaccaccacaa |
417 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14527833 |
aa--atagagataagctattaaatcttatacctcttcttttcttttgaatgtatctctgtttccagatataagctccaaaagttacggcaaccaccacaa |
14527736 |
T |
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| Q |
418 |
cgatcaccgaactaactactgcaacgactatcactactacattacctgtacaagtcaacaaattggattcatactcaagatttatcactactaggtttgt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14527735 |
cgatcaccgaactaactactgcaacgactatcactactacattacctgtacaagtcaacaaattggattcatactcaagatttatcactactaggtttgt |
14527636 |
T |
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| Q |
518 |
taatttttctcaatgcatgaacctacatcctagaataat |
556 |
Q |
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| T |
14527635 |
taatttttctcaatgcatgaagctacatcctagcataat |
14527597 |
T |
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