View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2485_low_30 (Length: 299)
Name: NF2485_low_30
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2485_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 12 - 281
Target Start/End: Complemental strand, 12995966 - 12995697
Alignment:
| Q |
12 |
agaaaggtcttttcagtgtcatgcattatctcatgcctaagcgccaaattctctccttacactctggttctaatatgggcaaaggtggcgatgttgctct |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12995966 |
agaaaggtcttttcagtgtcatgcattatctcatgcctaagcgccaaattctctccttacactctggttctaatatgggcaaaggtggcgatgttgctct |
12995867 |
T |
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| Q |
112 |
cttctttggactctcaggtatagtattcaatgtagctacctcttccagccagccatgcgctccccgatatgttcccttccttgtcctatactccactaga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12995866 |
cttctttggactctcaggtatagtattcaatgtagctacctcttccagccagccatgcgctccccgatatgttcccttccttgtcctatactccactaga |
12995767 |
T |
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| Q |
212 |
tatatcatatatacttagccatggatattagttatggcttttgttttcattttcttataattctaatgga |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12995766 |
tatatcatatatacttagccatggatattagttatggcttttgttttcattttcttataattctaatgga |
12995697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 12 - 281
Target Start/End: Complemental strand, 13070619 - 13070350
Alignment:
| Q |
12 |
agaaaggtcttttcagtgtcatgcattatctcatgcctaagcgccaaattctctccttacactctggttctaatatgggcaaaggtggcgatgttgctct |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13070619 |
agaaaggtcttttcagtgtcatgcattatctcatgcctaagcgccaaattctctccttacactctggttctaatatgggcaaaggtggcgatgttgctct |
13070520 |
T |
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| Q |
112 |
cttctttggactctcaggtatagtattcaatgtagctacctcttccagccagccatgcgctccccgatatgttcccttccttgtcctatactccactaga |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13070519 |
cttctttggactctcaggtatagtattcaatgtagctacctcttccagccagccatgcgctccccgatatgttcccttccttgtcctatactccactaga |
13070420 |
T |
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| Q |
212 |
tatatcatatatacttagccatggatattagttatggcttttgttttcattttcttataattctaatgga |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13070419 |
tatatcatatatacttagccatggatattagttatggcttttgttttcattttcttataattctaatgga |
13070350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 133
Target Start/End: Complemental strand, 28138008 - 28137887
Alignment:
| Q |
12 |
agaaaggtcttttcagtgtcatgcattatctcatgcctaagcgccaaattctctccttacactctggttctaatatgggcaaaggtggcgatgttgctct |
111 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||| ||| ||||||||||| |
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| T |
28138008 |
agaagggtctttttagtgtcatgcattatctcatgcctaagcgtcaaatcctttccttacactctggcagcaatatgggcaaagatggtgatgttgctct |
28137909 |
T |
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| Q |
112 |
cttctttggactctcaggtata |
133 |
Q |
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|||||||||||||||||||||| |
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| T |
28137908 |
cttctttggactctcaggtata |
28137887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 51935268 - 51935150
Alignment:
| Q |
12 |
agaaaggtcttttcagtgtcatgcattatctcatgcctaagcgccaaattctctccttacactctggttctaatatgggcaaaggtggcgatgttgctct |
111 |
Q |
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|||||||||| || ||| | ||||| || |||||||| |||||| | ||||||||| |||| ||||| | ||||||||||||| |||||||||||| || |
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| T |
51935268 |
agaaaggtctctttagtttaatgcactacctcatgccgaagcgcaatattctctccctacattctggatgtaatatgggcaaaaatggcgatgttgcgct |
51935169 |
T |
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| Q |
112 |
cttctttggactctcaggt |
130 |
Q |
| |
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||| |||||| | |||||| |
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| T |
51935168 |
cttttttggattatcaggt |
51935150 |
T |
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