View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2485_low_34 (Length: 277)
Name: NF2485_low_34
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2485_low_34 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 35901301 - 35901052
Alignment:
| Q |
11 |
attattctaaaacagcaaaagatgtactcatcccgttcggtaccaataggagatcctgtnnnnnnnnnnnnnntttagttcttggaaacaatatcaaagc |
110 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
35901301 |
attattctaaaacagcaaaagatgtactcgtcccgttcggtaccaataggagatcctgtaaaaaaaaattaattttagttcttggaaacaatatcaaagc |
35901202 |
T |
|
| Q |
111 |
attgcagtttccatggcataaattgcatatgagggaaaaaataaatggtcatgataaaagataaatcaagtaccattaatcaaggcaagtcaaatatata |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35901201 |
attgcagtttccatggcataaattgcatatgagggaaaaaataaatggtcatgataaaagataaatcaagtaccattaatcaaggcaagtcaaatatata |
35901102 |
T |
|
| Q |
211 |
gattaactaaactgtgcaactaatcgttttattatggctgaatattgaac |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35901101 |
gattaactaaactgtgcaactaatcgttttattatggctgaatattgaac |
35901052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 8347929 - 8347703
Alignment:
| Q |
11 |
attattctaaaacagcaaaagatgtactcatcccgttcggtaccaataggagatcctgtnnnnnnnnnnnnnn--tttagttcttggaaacaatatcaaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
8347929 |
attattctaaaacagcaaaagatgtactcatcttgtccggtaccaataggagatcctgcaaaaacaaaaattacttttagttcttggaaacaacatcaaa |
8347830 |
T |
|
| Q |
109 |
gcattgcagtttccatggcataaattgcatatgaggg-aaaaaataaatggtcatgataaaagataaatcaagtac-----cattaatcaaggcaagtca |
202 |
Q |
| |
|
||||||| |||||| || |||||||||||||| ||| | |||||||||||||||||| ||||||||||||| || ||||||||| | ||||| | |
|
|
| T |
8347829 |
gcattgccatttccagggaataaattgcatatgggggcagcaaataaatggtcatgatataagataaatcaagcacctaatcattaatcaggacaagtga |
8347730 |
T |
|
| Q |
203 |
aatatatagattaactaaactgtgcaa |
229 |
Q |
| |
|
|||| ||||||||||| |||||||||| |
|
|
| T |
8347729 |
aatacatagattaacttaactgtgcaa |
8347703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University