View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2485_low_36 (Length: 252)
Name: NF2485_low_36
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2485_low_36 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 29287459 - 29287693
Alignment:
| Q |
18 |
catggaacaaacgactgagaaccattctgtcctagcaagcacaaaactccgagtctcgtttctaacacacatctcaacacctacctcggtttttattaaa |
117 |
Q |
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| T |
29287459 |
catggaacaaacgagtgagaaccattatgtcctagcaagcacaaaactccgagtctcgtttctaacacacatctcaacacctacctcggtttttattaaa |
29287558 |
T |
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| Q |
118 |
ggaaaaataggagtctatgttgcattttccgcgcgacatatcaggttttcttcacaaaggtgcatctgctacactacttctgccatgccacagctgttgc |
217 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29287559 |
ggaaaaataggagtctatgttgcattttccgcacgacatatcaggttttcttcacaaaggtgcatctgctacactacttctgccatgccacagctgttgc |
29287658 |
T |
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| Q |
218 |
agcagttgagatgcgcgcgtttctgtttgtttctc |
252 |
Q |
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| T |
29287659 |
agcagttgagatgcgcgtgtttctgtttgtttctc |
29287693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 35236168 - 35236398
Alignment:
| Q |
18 |
catggaacaaacgactgagaaccattctgtcctagcaagcacaaaactccgagtctcgtttctaacacacatctcaacacctacctcggtttttattaaa |
117 |
Q |
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||||||||||| | |||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||| |
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| T |
35236168 |
catggaacaaatgggcgagaaccattctgtcccagcaagtacaaaactccgagtctcgtctctaacacacatctcaaaacctaccccggtttttattaaa |
35236267 |
T |
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| Q |
118 |
ggaaaaataggagtctatgttgcattttccgcgcgacatatcaggttttcttcacaaaggtgcatctgctacactacttctgccatgccacagctgttgc |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || || ||||| ||||||||| |||||| | |
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| T |
35236268 |
agaaaaataggagtctatgttgcattttcctcgcgacatatcaggttttctccacaaaggtgcatctgccacgctgcttctcccatgccacggctgtttc |
35236367 |
T |
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| Q |
218 |
agcagttgagatgcgcgcgtttctgtttgtttctc |
252 |
Q |
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| T |
35236368 |
aac---tgag-tgcgcgtgtttctgtttgtttctc |
35236398 |
T |
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