View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2485_low_4 (Length: 544)
Name: NF2485_low_4
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2485_low_4 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 494; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 18 - 535
Target Start/End: Original strand, 7352774 - 7353291
Alignment:
| Q |
18 |
ccaacaagaagaagccagtgtattatcaggtcaaagaagcattctttgttcagttgttcagattcaattcaactaactaatccattcatttacaaccatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7352774 |
ccaacaagaagaagccagtgtattatcaggtcaaagaagcattctttgttcagttgttcagattcaattcaactaactaatccattcatttacaaccatt |
7352873 |
T |
|
| Q |
118 |
tgagtaagaaacaatctctgatttctgaacacaaacaatagcatcaaaatcacatttcaaaagagaaaatccaaacaaaatcagcagcaaccatataaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7352874 |
tgagtaagaaacaatctctgatttctgaacacaaacaatagcatcaaaatcacatttcaaaagagaaaatccaaacaaaatcagcagcaaccatataaga |
7352973 |
T |
|
| Q |
218 |
tagtcatagtattttcattcgcatcattaacagtactaacatcatctcaaggataatctttgtgaagccagcttcccaggccaactcaaaaccatgaatg |
317 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7352974 |
taatcatagtattttcattcgcatcattaacagtactaacatcatctcaaggataatctttgtgaagccagcttcccaggccaactcaaaaccatgaatg |
7353073 |
T |
|
| Q |
318 |
actcttcaccattcagcagcatttcacctcccctccattaaaatccctaactttcccgtcgcttgaactaaacagatccttagaagctacattcatattc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7353074 |
actcttcaccattcagcagcatttcacctcccctccattaaaatccctcactttcccgtcgcttgaactaaacagatccttagaagctacattcatattc |
7353173 |
T |
|
| Q |
418 |
aatttgataacccaactaaggtttggcctaaactctaagcacccatccttattatgtgacaaactctccataagtagcctttcattcttcttggaccttt |
517 |
Q |
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| T |
7353174 |
aatttgataacccggctcaggtttggcctaaactctaaacacccatccttattatgtgacaaactctccataagtagcctttcattcttcttggaccttt |
7353273 |
T |
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| Q |
518 |
ccatttctaaatattctt |
535 |
Q |
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|||||||||||||||||| |
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| T |
7353274 |
ccatttctaaatattctt |
7353291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 7353596 - 7353713
Alignment:
| Q |
18 |
ccaacaagaagaagccagtgtattatcaggtcaaagaagcattctttgttcagttgttcagattcaattcaactaactaatccattcatttacaaccatt |
117 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||| ||||||||| |||| ||| |
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| T |
7353596 |
ccaacaagaagaagccaatgtattatcaggtcaaagaagcattctttgttcagttgtt-acattcaattcaactaattaat-cattcatttgcaacaatt |
7353693 |
T |
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| Q |
118 |
tgagtaagaaacaatctctga |
138 |
Q |
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||| ||| |||||||||||| |
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| T |
7353694 |
tgaccaag-aacaatctctga |
7353713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 7336095 - 7336162
Alignment:
| Q |
51 |
aagaagcattctttgttcagttgttcagattcaattcaactaactaatccattcatttacaaccattt |
118 |
Q |
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| T |
7336095 |
aagaagtattctttgttcagttgttcgcattcgattcagctaactaatccattcttttacaaccattt |
7336162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 7365200 - 7365266
Alignment:
| Q |
45 |
aggtcaaagaagcattctttgttcagttgttcagattcaattcaactaactaatccattcatttacaa |
112 |
Q |
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| T |
7365200 |
aggtcaaagaagcatttttt-ttcagttcttaacattcaattcaactaactaacccattcatttacaa |
7365266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 7370316 - 7370371
Alignment:
| Q |
79 |
attcaattcaactaactaatccattcatttacaaccatttgagtaagaaacaatctct |
136 |
Q |
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| T |
7370316 |
attcaattcaactaactaatccattca--tacaaccatttgaataagaaaccatctct |
7370371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Original strand, 7373127 - 7373176
Alignment:
| Q |
88 |
aactaactaatccattcatttacaaccatttgagtaagaaacaatctctga |
138 |
Q |
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||||||||||||||| ||||||||||||||||| |||| |||||||||||| |
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| T |
7373127 |
aactaactaatccatgcatttacaaccatttgattaag-aacaatctctga |
7373176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 529
Target Start/End: Complemental strand, 7908809 - 7908738
Alignment:
| Q |
457 |
cacccatccttatta-tgtgacaaactctccataagtagcctttcattcttcttggacctttccatttctaaat |
529 |
Q |
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||||||||||||||| ||||||||||||| |||| ||| ||| |||| ||||| ||||||||||||||||||| |
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| T |
7908809 |
cacccatccttattaatgtgacaaactct--ataaatagtcttgcatttttcttagacctttccatttctaaat |
7908738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 129
Target Start/End: Original strand, 7332107 - 7332138
Alignment:
| Q |
98 |
tccattcatttacaaccatttgagtaagaaac |
129 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
7332107 |
tccattcatttacaaccatttgagtaagaaac |
7332138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 7375105 - 7375144
Alignment:
| Q |
73 |
gttcagattcaattcaactaactaatccattcatttacaac |
113 |
Q |
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| T |
7375105 |
gttcacattcaattcaactaactaat-cattcatttacaac |
7375144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 55201 - 55270
Alignment:
| Q |
51 |
aagaagcattctttgttcagttgttcagattcaattcaactaactaatccattcatttacaaccatttga |
120 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| || | ||||||||||||||||| |
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| T |
55201 |
aagaagcattctttgttcagttgttcacattcaattcaactaactaacccctccatttacaaccatttga |
55270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 40917894 - 40917825
Alignment:
| Q |
51 |
aagaagcattctttgttcagttgttcagattcaattcaactaactaatccattcatttacaaccatttga |
120 |
Q |
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| T |
40917894 |
aagaagcattctttgttcagttgttcacattcaattcaactaactaacccctccatttacaaccatttga |
40917825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 69 - 120
Target Start/End: Original strand, 18499263 - 18499314
Alignment:
| Q |
69 |
agttgttcagattcaattcaactaactaatccattcatttacaaccatttga |
120 |
Q |
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||||||||| ||||||||||||||||||| || | ||||||||||||||||| |
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| T |
18499263 |
agttgttcacattcaattcaactaactaacccctccatttacaaccatttga |
18499314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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