View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2485_low_41 (Length: 236)
Name: NF2485_low_41
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2485_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 41448829 - 41448599
Alignment:
| Q |
1 |
aaatggccagctggttgagcagtatgcagaagcagtttcacactacatagtgtgtataagttcttaactccaacatcaaaataaatatctggacataatt |
100 |
Q |
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| T |
41448829 |
aaatggccggctggttgagcaatatgcagaagcagtttcacactacatagtgtgtataagttcttaactccaacatcaaaacaaatatctggacataata |
41448730 |
T |
|
| Q |
101 |
gaaccaaagataaatttggcatctttcagtaagaa-gttataaagaaaataagccaa---------ttcgataaaacgtgaactagccctaccaattcag |
190 |
Q |
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| T |
41448729 |
gaaccaaagataattttgggatcgttcagtaagaatattataaagaaaataagccaatgtactccgttggataaaacgtgaactagacctaccatttcag |
41448630 |
T |
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| Q |
191 |
tagcaatgaacaaagttcaattggaaaaatt |
221 |
Q |
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|||||||||||| ||||| |||||||||||| |
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| T |
41448629 |
tagcaatgaacagagttctattggaaaaatt |
41448599 |
T |
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