View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2485_low_42 (Length: 235)
Name: NF2485_low_42
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2485_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 19973577 - 19973744
Alignment:
| Q |
16 |
tcatcaatcaaataagacttcacatgttgttgaggcccttgctgacgaagctaatttcgatatcatttggtacttgacatttaaatctatgtgagagaca |
115 |
Q |
| |
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||||||||||||||||| || |||||||||||||||||||| || ||||| ||||| | | ||||||||| |||| |||| |||||||| ||| || |
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| T |
19973577 |
tcatcaatcaaataagagtttacatgttgttgaggcccttgtcgatgaagcaaattttgttttcatttggtgcttggtatttgtatctatgtaagatgca |
19973676 |
T |
|
| Q |
116 |
ctcttaattgaaatggtgttcagtactttcgcattctgcataatatattttgcaaattgaacctcaca |
183 |
Q |
| |
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|||||||||| |||||||||| |||||||||||||||||||||||| | |||||||||||||||||| |
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|
| T |
19973677 |
ctcttaattgtcatggtgttcaatactttcgcattctgcataatatagtatgcaaattgaacctcaca |
19973744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 19929533 - 19929318
Alignment:
| Q |
1 |
actatgccctaattttcatcaatcaaataagacttcacatgttgttgaggcccttgctgacgaagctaatttcgatatcatttggtacttgacatttaaa |
100 |
Q |
| |
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|||||| | ||| ||||||||||||||||||| || |||||||| ||||||||||| ||||||||| |||| | ||||||| |||| ||||| | |
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| T |
19929533 |
actatgacataactttcatcaatcaaataagagtttacatgttgatgaggcccttgtgcacgaagctagtttcttcaaaatttggtgcttggcatttgta |
19929434 |
T |
|
| Q |
101 |
tctatgtgagagacactcttaattgaaatggtgttcagtactttcgcattctgcataatatattttgcaaattgaacctcacactccgtgcctgtatagc |
200 |
Q |
| |
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|||| | |||| |||||| ||||| ||||| |||| |||||| | ||||||||||||||||||||||||||||| |||||| || ||| | |||| | |
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| T |
19929433 |
tctacggaagaggtactcttgattgacatggtcttcaatacttttgaattctgcataatatattttgcaaattgaagctcacaatctgtgtatttataac |
19929334 |
T |
|
| Q |
201 |
ctttaagcaagcatgt |
216 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
19929333 |
ctttaagcaagcatgt |
19929318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 47605295 - 47605512
Alignment:
| Q |
1 |
actatgccctaattttcatcaatcaaataagacttcacatgttgttgaggcccttgctgacgaagctaatttcgatatcatttggtacttgacatttaaa |
100 |
Q |
| |
|
|||||||||||| ||||||| || |||| ||| || |||||||| ||||||||||| | || ||| ||||| | || ||||||||||||||||| | |
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| T |
47605295 |
actatgccctaactttcatccat-aaattagagtttacatgttgatgaggcccttgtccatgaggctgatttccttgacaattggtacttgacatttata |
47605393 |
T |
|
| Q |
101 |
tctatgtgagagacactcttaattgaaatggtgttcagtactttcgcattctgcataatatattttgcaaattgaacctcacactccgtgcctgtatagc |
200 |
Q |
| |
|
|||| |||| || |||| ||||| |||||||||| |||||| | |||||||||||||||||| |||||||||| ||||| ||||||| | || | | |
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|
| T |
47605394 |
tctacagaagaggcaatcttgattgacatggtgttcaatacttttgaattctgcataatatatttggcaaattgaagttcacattccgtgcatttaaaac |
47605493 |
T |
|
| Q |
201 |
ctttaagcaagcatgttct |
219 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
47605494 |
ctttaagcaagcatgttct |
47605512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 17167287 - 17167353
Alignment:
| Q |
114 |
cactcttaattgaaatggtgttcagtactttcgcattctgcataatatattttgcaaattgaacctc |
180 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
17167287 |
cactcttaattgaaatggtgtttagtactttcgcattctgcataatatattttacaaattgaacctc |
17167353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 19935810 - 19935594
Alignment:
| Q |
1 |
actatgccctaattttcatcaatcaaataagacttcacatgttgttgaggcccttgctgacgaagctaatttcgatatcatttggtacttgacatttaaa |
100 |
Q |
| |
|
|||||| ||||| |||||||||||||| |||| || |||||||| ||||||||||| ||||||| | |||| ||||||| |||| |||| | |
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|
| T |
19935810 |
actatgacctaactttcatcaatcaaacaagagtttacatgttgatgaggcccttgtacacgaagcaagtttcatccaaatttggtgcttggtatttgta |
19935711 |
T |
|
| Q |
101 |
tctatgtgagagacactcttaattgaaatggtgttcagtactttcgcattctgcataatatattttgcaaattgaacctcacactccgtgcctgtatagc |
200 |
Q |
| |
|
|||||| |||| | ||||| ||||| ||||| |||| ||||| | ||||||||||||||||||||||||||||| ||||| || |||| | ||||| |
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|
| T |
19935710 |
tctatggaagaggcgctcttgattgacatggtcttcaatacttctgaattctgcataatatattttgcaaattgaagctcacgatctgtgcattcatagc |
19935611 |
T |
|
| Q |
201 |
ctttaagcaagcatgtt |
217 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
19935610 |
ctttaagcaagcatgtt |
19935594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 19966949 - 19966733
Alignment:
| Q |
1 |
actatgccctaattttcatcaatcaaataagacttcacatgttgttgaggcccttgctgacgaagctaatttcgatatcatttggtacttgacatttaaa |
100 |
Q |
| |
|
|||||| ||||| |||||||||||||| |||| || |||||||| ||||||||||| ||||||| | |||| ||||||| |||| |||| | |
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|
| T |
19966949 |
actatgacctaactttcatcaatcaaacaagagtttacatgttgatgaggcccttgtacacgaagcaagtttcatccaaatttggtgcttggtatttgta |
19966850 |
T |
|
| Q |
101 |
tctatgtgagagacactcttaattgaaatggtgttcagtactttcgcattctgcataatatattttgcaaattgaacctcacactccgtgcctgtatagc |
200 |
Q |
| |
|
|||||| |||| | ||||| ||||| ||||| |||| ||||| | ||||||||||||||||||||||||||||| ||||| || |||| | ||||| |
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|
| T |
19966849 |
tctatggaagaggcgctcttgattgacatggtcttcaatacttctgaattctgcataatatattttgcaaattgaagctcacgatctgtgcattcatagc |
19966750 |
T |
|
| Q |
201 |
ctttaagcaagcatgtt |
217 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
19966749 |
ctttaagcaagcatgtt |
19966733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 3 - 176
Target Start/End: Original strand, 4287887 - 4288060
Alignment:
| Q |
3 |
tatgccctaattttcatcaatcaaataagacttcacatgttgttgaggcccttgctgacgaagctaatttcgatatcatttggtacttgacatttaaatc |
102 |
Q |
| |
|
|||||||||||| || ||||||||| | || || ||||||||||||||||||| |||||||||| ||| ||| |||||| ||||| | ||| || |
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|
| T |
4287887 |
tatgccctaattgtcgtcaatcaaacacgaatttgcatgttgttgaggcccttggcaacgaagctaacttcaataacatttgatactttgcttttctatt |
4287986 |
T |
|
| Q |
103 |
tatgtgagagacactcttaattgaaatggtgttcagtactttcgcattctgcataatatattttgcaaattgaa |
176 |
Q |
| |
|
| | |||| ||||||||||| ||||| |||| ||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
4287987 |
tcttgaagaggtactcttaattgtcatggtattcaacacttttgaattctgcataatatattttgcaaattgaa |
4288060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 176
Target Start/End: Original strand, 3254907 - 3254939
Alignment:
| Q |
144 |
tcgcattctgcataatatattttgcaaattgaa |
176 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
3254907 |
tcgcattctgcaaaatatattttgcaaattgaa |
3254939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 7174856 - 7174892
Alignment:
| Q |
137 |
agtactttcgcattctgcataatatattttgcaaatt |
173 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||| |
|
|
| T |
7174856 |
agtacattagcattctgcataatatattttgcaaatt |
7174892 |
T |
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