View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2485_low_6 (Length: 524)
Name: NF2485_low_6
Description: NF2485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2485_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 16 - 512
Target Start/End: Complemental strand, 18975486 - 18974991
Alignment:
| Q |
16 |
gttccaactcctctaaattcctcaatcctcttataagtacctctttaaatgtttaaggtttctcaccttacaattacttgatgccaaaatgcttgttggt |
115 |
Q |
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| T |
18975486 |
gttccaactcctcaaaattcctcaatcctcttataagtacctctttaaatgtttaccgtttctcaccttacaattacttgatgccaaaatgcttgtaggt |
18975387 |
T |
|
| Q |
116 |
accactcatcatcaacatacaatgagatgttgttctatcttcttcggagccaacttctcgatcctgttatgatcataagctttcataattaaaagtttat |
215 |
Q |
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| T |
18975386 |
accactcatcatcaacatacaatgagatgttgttctatcttcttcggagccaacttctcgatcctgttatgatcataagctttcataattaaaagtttac |
18975287 |
T |
|
| Q |
216 |
ggttctctacattgtagtgtttaaaatagtgacctcataattgttaatttaacaaaaataagaaaatgcagatatgtgtctcaaaacccaaccgcaaact |
315 |
Q |
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| T |
18975286 |
ggttctctacattgtagtgtttaaaatagtcac-tcataattgttaatttaacaaaaataagaaaatgcagatatgtgtctcaaaacccaaccgcaaact |
18975188 |
T |
|
| Q |
316 |
tttgatttgaacgacaacatcggttgcgtttatattttggacaattcacaagtattggtccatatagtgaactatcaatgaaagtggttattgtaaaact |
415 |
Q |
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|||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18975187 |
tttgatttgaacgacaacatcgattgcgtttatatttcggacaattcaaaagtattggtccatatagtgaactatcaatgaaagtggttattgtaaaact |
18975088 |
T |
|
| Q |
416 |
tcaaccaaactcccttgtaatcaaagattctctatattcacgcattcgtaacattgatagtcattcaattaagattggactatcccgattcaaccta |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18975087 |
tcaaccaaactcccttgtaatcaaagattctctatattcacgcattcgtaacattgatagtaattcaattaagattggactatcccgattcaaccta |
18974991 |
T |
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